Strain Fitness in Dechlorosoma suillum PS around Dsui_2556

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2553 and Dsui_2554 are separated by 127 nucleotidesDsui_2554 and Dsui_2555 overlap by 4 nucleotidesDsui_2555 and Dsui_2556 are separated by 87 nucleotidesDsui_2556 and Dsui_2557 are separated by 110 nucleotides Dsui_2553: Dsui_2553 - Phage X family/Phage replication protein CRI, at 2,704,500 to 2,705,582 _2553 Dsui_2554: Dsui_2554 - hypothetical protein, at 2,705,710 to 2,705,973 _2554 Dsui_2555: Dsui_2555 - Bacteriophage coat protein B, at 2,705,970 to 2,706,167 _2555 Dsui_2556: Dsui_2556 - hypothetical protein, at 2,706,255 to 2,707,346 _2556 Dsui_2557: Dsui_2557 - transposase, at 2,707,457 to 2,708,947 _2557 Position (kb) 2706 2707 2708Strain fitness (log2 ratio) -2 -1 0 1 2at 2705.335 kb on + strand, within Dsui_2553at 2705.527 kb on - strandat 2705.577 kb on + strandat 2705.680 kb on - strandat 2705.681 kb on - strandat 2705.753 kb on - strand, within Dsui_2554at 2705.824 kb on + strand, within Dsui_2554at 2705.894 kb on + strand, within Dsui_2554at 2705.939 kb on + strandat 2706.007 kb on + strand, within Dsui_2555at 2706.015 kb on - strand, within Dsui_2555at 2706.043 kb on - strand, within Dsui_2555at 2706.146 kb on - strand, within Dsui_2555at 2706.170 kb on + strandat 2706.516 kb on - strand, within Dsui_2556at 2706.542 kb on - strand, within Dsui_2556at 2706.542 kb on - strand, within Dsui_2556at 2706.542 kb on - strandat 2706.598 kb on - strandat 2706.666 kb on - strand, within Dsui_2556at 2706.701 kb on + strand, within Dsui_2556at 2706.737 kb on - strand, within Dsui_2556at 2706.757 kb on + strand, within Dsui_2556at 2706.896 kb on - strand, within Dsui_2556at 2706.962 kb on - strand, within Dsui_2556at 2706.965 kb on - strand, within Dsui_2556at 2707.165 kb on + strand, within Dsui_2556at 2707.170 kb on + strand, within Dsui_2556

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,705,335 + Dsui_2553 0.77 +0.0
2,705,527 - -0.3
2,705,577 + -0.0
2,705,680 - +0.6
2,705,681 - +1.4
2,705,753 - Dsui_2554 0.16 -0.4
2,705,824 + Dsui_2554 0.43 -1.0
2,705,894 + Dsui_2554 0.70 +0.1
2,705,939 + +0.6
2,706,007 + Dsui_2555 0.19 +0.3
2,706,015 - Dsui_2555 0.23 +0.3
2,706,043 - Dsui_2555 0.37 +0.2
2,706,146 - Dsui_2555 0.89 -0.5
2,706,170 + +0.1
2,706,516 - Dsui_2556 0.24 +1.3
2,706,542 - Dsui_2556 0.26 -0.2
2,706,542 - Dsui_2556 0.26 -1.9
2,706,542 - +1.8
2,706,598 - +0.6
2,706,666 - Dsui_2556 0.38 -2.1
2,706,701 + Dsui_2556 0.41 -0.2
2,706,737 - Dsui_2556 0.44 -0.7
2,706,757 + Dsui_2556 0.46 -0.2
2,706,896 - Dsui_2556 0.59 -0.2
2,706,962 - Dsui_2556 0.65 +0.3
2,706,965 - Dsui_2556 0.65 +1.6
2,707,165 + Dsui_2556 0.83 -0.7
2,707,170 + Dsui_2556 0.84 -0.7

Or see this region's nucleotide sequence