Strain Fitness in Dechlorosoma suillum PS around Dsui_2540

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2538 and Dsui_2539 are separated by 153 nucleotidesDsui_2539 and Dsui_2540 are separated by 24 nucleotidesDsui_2540 and Dsui_2541 overlap by 4 nucleotidesDsui_2541 and Dsui_2542 overlap by 4 nucleotides Dsui_2538: Dsui_2538 - acetoacetyl-CoA reductase, at 2,690,074 to 2,690,814 _2538 Dsui_2539: Dsui_2539 - polyhydroxyalkanoate synthesis repressor PhaR, at 2,690,968 to 2,691,531 _2539 Dsui_2540: Dsui_2540 - ribosomal protein S12 methylthiotransferase RimO, at 2,691,556 to 2,692,899 _2540 Dsui_2541: Dsui_2541 - putative esterase of the alpha-beta hydrolase superfamily, at 2,692,896 to 2,693,765 _2541 Dsui_2542: Dsui_2542 - FAD/FMN-dependent dehydrogenase, at 2,693,762 to 2,695,168 _2542 Position (kb) 2691 2692 2693Strain fitness (log2 ratio) -2 -1 0 1 2at 2690.576 kb on - strandat 2690.640 kb on + strand, within Dsui_2538at 2690.667 kb on + strand, within Dsui_2538at 2690.675 kb on - strand, within Dsui_2538at 2690.711 kb on + strand, within Dsui_2538at 2690.737 kb on + strand, within Dsui_2538at 2690.742 kb on - strandat 2690.747 kb on + strandat 2690.747 kb on + strandat 2690.811 kb on - strandat 2690.821 kb on + strandat 2690.964 kb on + strandat 2690.994 kb on + strandat 2691.046 kb on - strand, within Dsui_2539at 2691.280 kb on + strand, within Dsui_2539at 2691.344 kb on + strand, within Dsui_2539at 2691.462 kb on - strand, within Dsui_2539at 2691.550 kb on + strandat 2691.579 kb on + strandat 2692.216 kb on + strand, within Dsui_2540at 2692.311 kb on + strand, within Dsui_2540at 2692.863 kb on - strandat 2692.878 kb on + strandat 2692.909 kb on - strandat 2692.948 kb on - strandat 2693.131 kb on - strand, within Dsui_2541at 2693.138 kb on + strand, within Dsui_2541at 2693.227 kb on + strand, within Dsui_2541at 2693.227 kb on + strand, within Dsui_2541at 2693.242 kb on - strand, within Dsui_2541at 2693.258 kb on + strand, within Dsui_2541at 2693.363 kb on + strand, within Dsui_2541at 2693.363 kb on + strand, within Dsui_2541at 2693.368 kb on + strand, within Dsui_2541at 2693.377 kb on + strand, within Dsui_2541at 2693.387 kb on + strand, within Dsui_2541at 2693.461 kb on + strand, within Dsui_2541at 2693.622 kb on + strand, within Dsui_2541at 2693.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,690,576 - +1.3
2,690,640 + Dsui_2538 0.76 +0.5
2,690,667 + Dsui_2538 0.80 +0.1
2,690,675 - Dsui_2538 0.81 -0.2
2,690,711 + Dsui_2538 0.86 +0.3
2,690,737 + Dsui_2538 0.89 +0.0
2,690,742 - +0.7
2,690,747 + -2.4
2,690,747 + -0.1
2,690,811 - +1.3
2,690,821 + +0.0
2,690,964 + -0.0
2,690,994 + +0.4
2,691,046 - Dsui_2539 0.14 +0.9
2,691,280 + Dsui_2539 0.55 +0.1
2,691,344 + Dsui_2539 0.67 -0.0
2,691,462 - Dsui_2539 0.88 +0.2
2,691,550 + +0.3
2,691,579 + -0.0
2,692,216 + Dsui_2540 0.49 -0.4
2,692,311 + Dsui_2540 0.56 -0.4
2,692,863 - +0.8
2,692,878 + +0.4
2,692,909 - +1.2
2,692,948 - -0.5
2,693,131 - Dsui_2541 0.27 -2.1
2,693,138 + Dsui_2541 0.28 +0.7
2,693,227 + Dsui_2541 0.38 +1.0
2,693,227 + Dsui_2541 0.38 +2.6
2,693,242 - Dsui_2541 0.40 +1.0
2,693,258 + Dsui_2541 0.42 +0.3
2,693,363 + Dsui_2541 0.54 -0.7
2,693,363 + Dsui_2541 0.54 +1.6
2,693,368 + Dsui_2541 0.54 +0.8
2,693,377 + Dsui_2541 0.55 -2.4
2,693,387 + Dsui_2541 0.56 +0.4
2,693,461 + Dsui_2541 0.65 -1.3
2,693,622 + Dsui_2541 0.83 -0.5
2,693,698 - -0.1

Or see this region's nucleotide sequence