Strain Fitness in Dechlorosoma suillum PS around Dsui_2438

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2437 and Dsui_2438 overlap by 17 nucleotidesDsui_2438 and Dsui_2439 overlap by 22 nucleotidesDsui_2439 and Dsui_2440 are separated by 6 nucleotides Dsui_2437: Dsui_2437 - pseudouridine synthase, RluA family, at 2,599,184 to 2,600,179 _2437 Dsui_2438: Dsui_2438 - haloacid dehalogenase superfamily enzyme, subfamily IA, at 2,600,163 to 2,600,819 _2438 Dsui_2439: Dsui_2439 - ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase, at 2,600,798 to 2,601,148 _2439 Dsui_2440: Dsui_2440 - ClpP class periplasmic serine protease, at 2,601,155 to 2,602,141 _2440 Position (kb) 2600 2601Strain fitness (log2 ratio) -1 0 1 2at 2599.221 kb on + strandat 2599.273 kb on + strandat 2599.317 kb on + strand, within Dsui_2437at 2599.317 kb on + strand, within Dsui_2437at 2599.319 kb on + strand, within Dsui_2437at 2599.629 kb on + strand, within Dsui_2437at 2599.637 kb on - strand, within Dsui_2437at 2599.672 kb on - strandat 2599.752 kb on + strand, within Dsui_2437at 2599.959 kb on + strand, within Dsui_2437at 2600.021 kb on + strand, within Dsui_2437at 2600.031 kb on - strandat 2600.046 kb on + strand, within Dsui_2437at 2600.069 kb on + strand, within Dsui_2437at 2600.099 kb on - strandat 2600.108 kb on + strandat 2600.114 kb on + strandat 2600.114 kb on + strandat 2600.210 kb on + strandat 2600.308 kb on + strand, within Dsui_2438at 2600.523 kb on + strand, within Dsui_2438at 2600.523 kb on + strand, within Dsui_2438at 2600.649 kb on + strand, within Dsui_2438at 2600.692 kb on + strand, within Dsui_2438at 2600.847 kb on - strandat 2600.919 kb on + strand, within Dsui_2439at 2600.924 kb on + strand, within Dsui_2439at 2600.997 kb on + strand, within Dsui_2439at 2601.006 kb on - strand, within Dsui_2439at 2601.010 kb on - strandat 2601.161 kb on + strandat 2601.212 kb on + strandat 2601.299 kb on - strand, within Dsui_2440at 2601.326 kb on + strand, within Dsui_2440at 2601.427 kb on + strand, within Dsui_2440at 2601.435 kb on - strand, within Dsui_2440at 2601.464 kb on + strand, within Dsui_2440at 2601.489 kb on + strand, within Dsui_2440at 2601.499 kb on + strand, within Dsui_2440at 2601.595 kb on + strand, within Dsui_2440at 2601.735 kb on + strand, within Dsui_2440at 2601.735 kb on + strand, within Dsui_2440at 2601.746 kb on + strand, within Dsui_2440

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,599,221 + -0.9
2,599,273 + -0.7
2,599,317 + Dsui_2437 0.13 -1.1
2,599,317 + Dsui_2437 0.13 +0.5
2,599,319 + Dsui_2437 0.14 +0.3
2,599,629 + Dsui_2437 0.45 -0.8
2,599,637 - Dsui_2437 0.45 -0.0
2,599,672 - +1.6
2,599,752 + Dsui_2437 0.57 -0.1
2,599,959 + Dsui_2437 0.78 -0.0
2,600,021 + Dsui_2437 0.84 +0.3
2,600,031 - +2.6
2,600,046 + Dsui_2437 0.87 -0.3
2,600,069 + Dsui_2437 0.89 -0.2
2,600,099 - +1.8
2,600,108 + +0.1
2,600,114 + -0.1
2,600,114 + -0.2
2,600,210 + -0.4
2,600,308 + Dsui_2438 0.22 +0.2
2,600,523 + Dsui_2438 0.55 -0.2
2,600,523 + Dsui_2438 0.55 +0.3
2,600,649 + Dsui_2438 0.74 +0.3
2,600,692 + Dsui_2438 0.81 -0.1
2,600,847 - +0.3
2,600,919 + Dsui_2439 0.34 +0.5
2,600,924 + Dsui_2439 0.36 +0.4
2,600,997 + Dsui_2439 0.57 -0.5
2,601,006 - Dsui_2439 0.59 +0.3
2,601,010 - -0.0
2,601,161 + +0.1
2,601,212 + +0.6
2,601,299 - Dsui_2440 0.15 -0.0
2,601,326 + Dsui_2440 0.17 +0.2
2,601,427 + Dsui_2440 0.28 -0.2
2,601,435 - Dsui_2440 0.28 -0.4
2,601,464 + Dsui_2440 0.31 +0.0
2,601,489 + Dsui_2440 0.34 -1.0
2,601,499 + Dsui_2440 0.35 -0.0
2,601,595 + Dsui_2440 0.45 -0.6
2,601,735 + Dsui_2440 0.59 +0.9
2,601,735 + Dsui_2440 0.59 +0.8
2,601,746 + Dsui_2440 0.60 +0.1

Or see this region's nucleotide sequence