Strain Fitness in Dechlorosoma suillum PS around Dsui_2401

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2400 and Dsui_2401 are separated by 13 nucleotidesDsui_2401 and Dsui_2402 are separated by 299 nucleotides Dsui_2400: Dsui_2400 - signal transduction histidine kinase, at 2,552,519 to 2,553,847 _2400 Dsui_2401: Dsui_2401 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,553,861 to 2,554,595 _2401 Dsui_2402: Dsui_2402 - hypothetical protein, at 2,554,895 to 2,555,281 _2402 Position (kb) 2553 2554 2555Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2553.100 kb on - strand, within Dsui_2400at 2553.186 kb on + strandat 2553.220 kb on - strand, within Dsui_2400at 2553.322 kb on + strand, within Dsui_2400at 2553.330 kb on - strand, within Dsui_2400at 2553.373 kb on - strand, within Dsui_2400at 2553.380 kb on - strand, within Dsui_2400at 2553.485 kb on + strandat 2553.528 kb on + strandat 2553.586 kb on + strandat 2553.587 kb on - strand, within Dsui_2400at 2553.650 kb on + strandat 2553.715 kb on - strandat 2553.737 kb on - strandat 2554.000 kb on - strand, within Dsui_2401at 2554.029 kb on + strandat 2554.075 kb on + strandat 2554.162 kb on - strand, within Dsui_2401at 2554.259 kb on - strand, within Dsui_2401at 2554.284 kb on - strand, within Dsui_2401at 2554.485 kb on - strand, within Dsui_2401at 2554.680 kb on + strandat 2554.719 kb on - strandat 2554.855 kb on + strandat 2554.898 kb on + strandat 2555.216 kb on + strand, within Dsui_2402at 2555.364 kb on + strandat 2555.372 kb on + strandat 2555.413 kb on - strandat 2555.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,553,100 - Dsui_2400 0.44 +0.6
2,553,186 + +2.5
2,553,220 - Dsui_2400 0.53 -0.5
2,553,322 + Dsui_2400 0.60 +0.5
2,553,330 - Dsui_2400 0.61 -0.4
2,553,373 - Dsui_2400 0.64 -0.2
2,553,380 - Dsui_2400 0.65 +0.5
2,553,485 + +2.5
2,553,528 + +0.9
2,553,586 + +3.5
2,553,587 - Dsui_2400 0.80 +0.6
2,553,650 + +2.5
2,553,715 - +0.8
2,553,737 - +0.3
2,554,000 - Dsui_2401 0.19 +0.5
2,554,029 + +0.9
2,554,075 + +1.5
2,554,162 - Dsui_2401 0.41 -2.0
2,554,259 - Dsui_2401 0.54 -0.4
2,554,284 - Dsui_2401 0.58 -0.3
2,554,485 - Dsui_2401 0.85 -0.9
2,554,680 + +0.2
2,554,719 - +0.9
2,554,855 + -0.6
2,554,898 + +1.9
2,555,216 + Dsui_2402 0.83 -1.6
2,555,364 + +2.5
2,555,372 + +0.9
2,555,413 - +2.5
2,555,413 - +1.5

Or see this region's nucleotide sequence