Strain Fitness in Dechlorosoma suillum PS around Dsui_2331

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2330 and Dsui_2331 are separated by 97 nucleotidesDsui_2331 and Dsui_2332 are separated by 38 nucleotides Dsui_2330: Dsui_2330 - 3-hydroxyacyl-CoA dehydrogenase, at 2,483,546 to 2,484,394 _2330 Dsui_2331: Dsui_2331 - heat shock protein, at 2,484,492 to 2,485,643 _2331 Dsui_2332: Dsui_2332 - uracil-xanthine permease, at 2,485,682 to 2,486,923 _2332 Position (kb) 2484 2485 2486Strain fitness (log2 ratio) -1 0 1 2at 2483.559 kb on - strandat 2483.630 kb on - strandat 2483.641 kb on - strandat 2483.691 kb on + strand, within Dsui_2330at 2483.755 kb on + strand, within Dsui_2330at 2483.780 kb on + strand, within Dsui_2330at 2483.788 kb on - strandat 2483.788 kb on - strand, within Dsui_2330at 2483.986 kb on - strandat 2484.055 kb on + strandat 2484.129 kb on - strand, within Dsui_2330at 2484.228 kb on + strand, within Dsui_2330at 2484.376 kb on + strandat 2484.387 kb on - strandat 2484.591 kb on + strandat 2484.599 kb on - strandat 2484.599 kb on - strandat 2484.996 kb on - strand, within Dsui_2331at 2485.093 kb on + strandat 2485.167 kb on - strand, within Dsui_2331at 2485.209 kb on + strand, within Dsui_2331at 2485.243 kb on - strand, within Dsui_2331at 2485.402 kb on - strand, within Dsui_2331at 2485.425 kb on - strand, within Dsui_2331at 2485.728 kb on - strandat 2485.764 kb on - strandat 2485.827 kb on - strand, within Dsui_2332at 2485.853 kb on + strand, within Dsui_2332at 2485.883 kb on + strand, within Dsui_2332at 2485.891 kb on - strand, within Dsui_2332at 2485.965 kb on - strand, within Dsui_2332at 2486.116 kb on + strand, within Dsui_2332at 2486.124 kb on - strand, within Dsui_2332at 2486.127 kb on + strandat 2486.149 kb on + strand, within Dsui_2332at 2486.162 kb on + strandat 2486.170 kb on - strand, within Dsui_2332at 2486.170 kb on - strand, within Dsui_2332at 2486.171 kb on - strand, within Dsui_2332at 2486.218 kb on + strandat 2486.368 kb on - strand, within Dsui_2332at 2486.533 kb on + strandat 2486.533 kb on + strand, within Dsui_2332at 2486.536 kb on - strand, within Dsui_2332at 2486.537 kb on - strand, within Dsui_2332at 2486.541 kb on - strand, within Dsui_2332at 2486.541 kb on - strand, within Dsui_2332at 2486.554 kb on - strand, within Dsui_2332

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,483,559 - +1.5
2,483,630 - +1.5
2,483,641 - +0.9
2,483,691 + Dsui_2330 0.17 +0.4
2,483,755 + Dsui_2330 0.25 -1.0
2,483,780 + Dsui_2330 0.28 +0.7
2,483,788 - +2.5
2,483,788 - Dsui_2330 0.29 -1.0
2,483,986 - +2.5
2,484,055 + +0.5
2,484,129 - Dsui_2330 0.69 -0.8
2,484,228 + Dsui_2330 0.80 -0.0
2,484,376 + +0.8
2,484,387 - +0.2
2,484,591 + -0.7
2,484,599 - +1.1
2,484,599 - +0.3
2,484,996 - Dsui_2331 0.44 -0.5
2,485,093 + +2.5
2,485,167 - Dsui_2331 0.59 +0.2
2,485,209 + Dsui_2331 0.62 -1.2
2,485,243 - Dsui_2331 0.65 -1.0
2,485,402 - Dsui_2331 0.79 +0.7
2,485,425 - Dsui_2331 0.81 +0.9
2,485,728 - -1.4
2,485,764 - +0.7
2,485,827 - Dsui_2332 0.12 +1.2
2,485,853 + Dsui_2332 0.14 +0.0
2,485,883 + Dsui_2332 0.16 +1.3
2,485,891 - Dsui_2332 0.17 +0.3
2,485,965 - Dsui_2332 0.23 -0.1
2,486,116 + Dsui_2332 0.35 -0.3
2,486,124 - Dsui_2332 0.36 +1.5
2,486,127 + +1.5
2,486,149 + Dsui_2332 0.38 +0.3
2,486,162 + +2.5
2,486,170 - Dsui_2332 0.39 +0.4
2,486,170 - Dsui_2332 0.39 -0.0
2,486,171 - Dsui_2332 0.39 +0.4
2,486,218 + +2.5
2,486,368 - Dsui_2332 0.55 +0.9
2,486,533 + +0.9
2,486,533 + Dsui_2332 0.69 +0.2
2,486,536 - Dsui_2332 0.69 +0.0
2,486,537 - Dsui_2332 0.69 +0.1
2,486,541 - Dsui_2332 0.69 -0.8
2,486,541 - Dsui_2332 0.69 -0.2
2,486,554 - Dsui_2332 0.70 +0.4

Or see this region's nucleotide sequence