Strain Fitness in Dechlorosoma suillum PS around Dsui_2316

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2314 and Dsui_2315 overlap by 1 nucleotidesDsui_2315 and Dsui_2316 are separated by 10 nucleotidesDsui_2316 and Dsui_2317 are separated by 39 nucleotides Dsui_2314: Dsui_2314 - 3-deoxy-8-phosphooctulonate synthase, at 2,470,368 to 2,471,207 _2314 Dsui_2315: Dsui_2315 - Stress responsive A/B Barrel Domain-containing protein, at 2,471,207 to 2,471,500 _2315 Dsui_2316: Dsui_2316 - hypothetical protein, at 2,471,511 to 2,471,801 _2316 Dsui_2317: Dsui_2317 - phosphopyruvate hydratase, at 2,471,841 to 2,473,124 _2317 Position (kb) 2471 2472Strain fitness (log2 ratio) -1 0 1 2at 2471.171 kb on + strandat 2471.171 kb on + strandat 2471.176 kb on + strandat 2471.235 kb on - strandat 2471.238 kb on + strand, within Dsui_2315at 2471.345 kb on - strandat 2471.437 kb on + strand, within Dsui_2315at 2471.574 kb on - strand, within Dsui_2316at 2471.703 kb on - strand, within Dsui_2316at 2471.769 kb on + strand, within Dsui_2316

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,471,171 + -0.8
2,471,171 + +0.5
2,471,176 + -0.1
2,471,235 - +1.5
2,471,238 + Dsui_2315 0.11 -1.2
2,471,345 - +2.5
2,471,437 + Dsui_2315 0.78 -0.1
2,471,574 - Dsui_2316 0.22 -0.8
2,471,703 - Dsui_2316 0.66 +0.3
2,471,769 + Dsui_2316 0.89 -1.1

Or see this region's nucleotide sequence