Strain Fitness in Dechlorosoma suillum PS around Dsui_2138

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2136 and Dsui_2137 are separated by 132 nucleotidesDsui_2137 and Dsui_2138 are separated by 35 nucleotidesDsui_2138 and Dsui_2139 are separated by 136 nucleotidesDsui_2139 and Dsui_2140 overlap by 4 nucleotides Dsui_2136: Dsui_2136 - Fe-S oxidoreductase, at 2,265,531 to 2,266,382 _2136 Dsui_2137: Dsui_2137 - queuosine biosynthesis protein QueD, at 2,266,515 to 2,266,961 _2137 Dsui_2138: Dsui_2138 - putative esterase, at 2,266,997 to 2,267,665 _2138 Dsui_2139: Dsui_2139 - Protein of unknown function (DUF3348), at 2,267,802 to 2,268,530 _2139 Dsui_2140: Dsui_2140 - hypothetical protein, at 2,268,527 to 2,270,617 _2140 Position (kb) 2266 2267 2268Strain fitness (log2 ratio) -1 0 1 2at 2266.422 kb on - strandat 2266.515 kb on + strandat 2266.518 kb on + strandat 2266.715 kb on + strand, within Dsui_2137at 2266.790 kb on + strand, within Dsui_2137at 2266.808 kb on + strand, within Dsui_2137at 2266.960 kb on + strandat 2266.987 kb on + strandat 2267.040 kb on + strandat 2267.045 kb on + strandat 2267.073 kb on - strandat 2267.118 kb on + strand, within Dsui_2138at 2267.232 kb on + strand, within Dsui_2138at 2267.497 kb on + strand, within Dsui_2138at 2267.610 kb on + strandat 2267.707 kb on - strandat 2267.744 kb on + strandat 2267.745 kb on + strandat 2267.799 kb on - strandat 2268.130 kb on - strandat 2268.176 kb on - strandat 2268.290 kb on + strand, within Dsui_2139at 2268.303 kb on + strand, within Dsui_2139at 2268.349 kb on + strand, within Dsui_2139at 2268.354 kb on + strand, within Dsui_2139at 2268.432 kb on + strand, within Dsui_2139at 2268.435 kb on + strand, within Dsui_2139at 2268.552 kb on + strandat 2268.582 kb on + strandat 2268.587 kb on + strandat 2268.592 kb on + strandat 2268.601 kb on - strandat 2268.644 kb on + strandat 2268.664 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,266,422 - -0.9
2,266,515 + +0.4
2,266,518 + +0.2
2,266,715 + Dsui_2137 0.45 -0.4
2,266,790 + Dsui_2137 0.62 -1.5
2,266,808 + Dsui_2137 0.66 +1.1
2,266,960 + +0.1
2,266,987 + -0.4
2,267,040 + -0.6
2,267,045 + -1.3
2,267,073 - +1.0
2,267,118 + Dsui_2138 0.18 -0.8
2,267,232 + Dsui_2138 0.35 -1.2
2,267,497 + Dsui_2138 0.75 -0.4
2,267,610 + -0.0
2,267,707 - +1.6
2,267,744 + -1.0
2,267,745 + -0.7
2,267,799 - +1.6
2,268,130 - +1.6
2,268,176 - +2.6
2,268,290 + Dsui_2139 0.67 -0.0
2,268,303 + Dsui_2139 0.69 -0.3
2,268,349 + Dsui_2139 0.75 +0.3
2,268,354 + Dsui_2139 0.76 -0.6
2,268,432 + Dsui_2139 0.86 +0.3
2,268,435 + Dsui_2139 0.87 +0.1
2,268,552 + -0.1
2,268,582 + +1.7
2,268,587 + +0.4
2,268,592 + -0.1
2,268,601 - -0.0
2,268,644 + +0.5
2,268,664 + -0.7

Or see this region's nucleotide sequence