Strain Fitness in Dechlorosoma suillum PS around Dsui_2046

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2044 and Dsui_2045 are separated by 150 nucleotidesDsui_2045 and Dsui_2046 are separated by 40 nucleotidesDsui_2046 and Dsui_2047 are separated by 168 nucleotides Dsui_2044: Dsui_2044 - Rhodanese-related sulfurtransferase, at 2,163,887 to 2,164,660 _2044 Dsui_2045: Dsui_2045 - hypothetical protein, at 2,164,811 to 2,165,128 _2045 Dsui_2046: Dsui_2046 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,165,169 to 2,166,848 _2046 Dsui_2047: Dsui_2047 - chromate transporter, chromate ion transporter family, at 2,167,017 to 2,168,399 _2047 Position (kb) 2165 2166 2167Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2164.174 kb on + strand, within Dsui_2044at 2164.259 kb on - strandat 2164.409 kb on + strand, within Dsui_2044at 2164.761 kb on + strandat 2164.791 kb on + strandat 2164.796 kb on + strandat 2164.796 kb on + strandat 2164.796 kb on + strandat 2164.796 kb on + strandat 2164.796 kb on + strandat 2164.804 kb on - strandat 2164.869 kb on + strandat 2164.893 kb on - strandat 2164.950 kb on + strand, within Dsui_2045at 2165.021 kb on + strand, within Dsui_2045at 2165.047 kb on - strand, within Dsui_2045at 2165.066 kb on + strand, within Dsui_2045at 2165.076 kb on + strand, within Dsui_2045at 2165.265 kb on + strandat 2165.317 kb on + strandat 2165.382 kb on + strand, within Dsui_2046at 2165.590 kb on + strandat 2165.638 kb on - strandat 2165.640 kb on + strandat 2165.648 kb on - strandat 2165.666 kb on + strand, within Dsui_2046at 2165.805 kb on - strand, within Dsui_2046at 2165.831 kb on + strand, within Dsui_2046at 2165.870 kb on + strandat 2166.141 kb on - strand, within Dsui_2046at 2166.174 kb on + strand, within Dsui_2046at 2166.192 kb on + strand, within Dsui_2046at 2166.361 kb on + strandat 2166.454 kb on + strandat 2166.505 kb on - strand, within Dsui_2046at 2166.505 kb on - strand, within Dsui_2046at 2166.535 kb on + strandat 2166.570 kb on + strand, within Dsui_2046at 2166.573 kb on - strand, within Dsui_2046at 2166.751 kb on - strandat 2166.786 kb on - strandat 2166.786 kb on - strandat 2167.001 kb on + strandat 2167.021 kb on - strandat 2167.222 kb on + strand, within Dsui_2047at 2167.302 kb on - strandat 2167.369 kb on + strandat 2167.377 kb on - strandat 2167.412 kb on + strand, within Dsui_2047at 2167.471 kb on + strand, within Dsui_2047at 2167.471 kb on + strandat 2167.479 kb on - strandat 2167.570 kb on + strand, within Dsui_2047at 2167.736 kb on + strand, within Dsui_2047

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,164,174 + Dsui_2044 0.37 -0.2
2,164,259 - +1.6
2,164,409 + Dsui_2044 0.67 +0.3
2,164,761 + +1.6
2,164,791 + +0.0
2,164,796 + -0.8
2,164,796 + -0.3
2,164,796 + +1.6
2,164,796 + +0.3
2,164,796 + +0.8
2,164,804 - +2.6
2,164,869 + +0.6
2,164,893 - +1.6
2,164,950 + Dsui_2045 0.44 +0.5
2,165,021 + Dsui_2045 0.66 +0.7
2,165,047 - Dsui_2045 0.74 +0.5
2,165,066 + Dsui_2045 0.80 +0.9
2,165,076 + Dsui_2045 0.83 -0.8
2,165,265 + -0.7
2,165,317 + +0.3
2,165,382 + Dsui_2046 0.13 -0.2
2,165,590 + +1.6
2,165,638 - +0.6
2,165,640 + +1.0
2,165,648 - +0.6
2,165,666 + Dsui_2046 0.30 +0.2
2,165,805 - Dsui_2046 0.38 -0.7
2,165,831 + Dsui_2046 0.39 +1.1
2,165,870 + +2.6
2,166,141 - Dsui_2046 0.58 -0.4
2,166,174 + Dsui_2046 0.60 -2.7
2,166,192 + Dsui_2046 0.61 -0.4
2,166,361 + +1.0
2,166,454 + +1.6
2,166,505 - Dsui_2046 0.80 -0.4
2,166,505 - Dsui_2046 0.80 +1.8
2,166,535 + +0.8
2,166,570 + Dsui_2046 0.83 +0.8
2,166,573 - Dsui_2046 0.84 +0.8
2,166,751 - +1.2
2,166,786 - -0.2
2,166,786 - -0.4
2,167,001 + -1.0
2,167,021 - +2.6
2,167,222 + Dsui_2047 0.15 -0.0
2,167,302 - +0.6
2,167,369 + +1.0
2,167,377 - +1.0
2,167,412 + Dsui_2047 0.29 +0.2
2,167,471 + Dsui_2047 0.33 +0.2
2,167,471 + +1.2
2,167,479 - +3.2
2,167,570 + Dsui_2047 0.40 +1.0
2,167,736 + Dsui_2047 0.52 -0.8

Or see this region's nucleotide sequence