Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2044 and Dsui_2045 are separated by 150 nucleotides Dsui_2045 and Dsui_2046 are separated by 40 nucleotides Dsui_2046 and Dsui_2047 are separated by 168 nucleotides
Dsui_2044: Dsui_2044 - Rhodanese-related sulfurtransferase, at 2,163,887 to 2,164,660
_2044
Dsui_2045: Dsui_2045 - hypothetical protein, at 2,164,811 to 2,165,128
_2045
Dsui_2046: Dsui_2046 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,165,169 to 2,166,848
_2046
Dsui_2047: Dsui_2047 - chromate transporter, chromate ion transporter family, at 2,167,017 to 2,168,399
_2047
Position (kb)
2165
2166
2167 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2164.174 kb on + strand, within Dsui_2044 at 2164.259 kb on - strand at 2164.409 kb on + strand, within Dsui_2044 at 2164.761 kb on + strand at 2164.791 kb on + strand at 2164.796 kb on + strand at 2164.796 kb on + strand at 2164.796 kb on + strand at 2164.796 kb on + strand at 2164.796 kb on + strand at 2164.804 kb on - strand at 2164.869 kb on + strand at 2164.893 kb on - strand at 2164.950 kb on + strand, within Dsui_2045 at 2165.021 kb on + strand, within Dsui_2045 at 2165.047 kb on - strand, within Dsui_2045 at 2165.066 kb on + strand, within Dsui_2045 at 2165.076 kb on + strand, within Dsui_2045 at 2165.265 kb on + strand at 2165.317 kb on + strand at 2165.382 kb on + strand, within Dsui_2046 at 2165.590 kb on + strand at 2165.638 kb on - strand at 2165.640 kb on + strand at 2165.648 kb on - strand at 2165.666 kb on + strand, within Dsui_2046 at 2165.805 kb on - strand, within Dsui_2046 at 2165.831 kb on + strand, within Dsui_2046 at 2165.870 kb on + strand at 2166.141 kb on - strand, within Dsui_2046 at 2166.174 kb on + strand, within Dsui_2046 at 2166.192 kb on + strand, within Dsui_2046 at 2166.361 kb on + strand at 2166.454 kb on + strand at 2166.505 kb on - strand, within Dsui_2046 at 2166.505 kb on - strand, within Dsui_2046 at 2166.535 kb on + strand at 2166.570 kb on + strand, within Dsui_2046 at 2166.573 kb on - strand, within Dsui_2046 at 2166.751 kb on - strand at 2166.786 kb on - strand at 2166.786 kb on - strand at 2167.001 kb on + strand at 2167.021 kb on - strand at 2167.222 kb on + strand, within Dsui_2047 at 2167.302 kb on - strand at 2167.369 kb on + strand at 2167.377 kb on - strand at 2167.412 kb on + strand, within Dsui_2047 at 2167.471 kb on + strand, within Dsui_2047 at 2167.471 kb on + strand at 2167.479 kb on - strand at 2167.570 kb on + strand, within Dsui_2047 at 2167.736 kb on + strand, within Dsui_2047
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 2,164,174 + Dsui_2044 0.37 -0.2 2,164,259 - +1.6 2,164,409 + Dsui_2044 0.67 +0.3 2,164,761 + +1.6 2,164,791 + +0.0 2,164,796 + -0.8 2,164,796 + -0.3 2,164,796 + +1.6 2,164,796 + +0.3 2,164,796 + +0.8 2,164,804 - +2.6 2,164,869 + +0.6 2,164,893 - +1.6 2,164,950 + Dsui_2045 0.44 +0.5 2,165,021 + Dsui_2045 0.66 +0.7 2,165,047 - Dsui_2045 0.74 +0.5 2,165,066 + Dsui_2045 0.80 +0.9 2,165,076 + Dsui_2045 0.83 -0.8 2,165,265 + -0.7 2,165,317 + +0.3 2,165,382 + Dsui_2046 0.13 -0.2 2,165,590 + +1.6 2,165,638 - +0.6 2,165,640 + +1.0 2,165,648 - +0.6 2,165,666 + Dsui_2046 0.30 +0.2 2,165,805 - Dsui_2046 0.38 -0.7 2,165,831 + Dsui_2046 0.39 +1.1 2,165,870 + +2.6 2,166,141 - Dsui_2046 0.58 -0.4 2,166,174 + Dsui_2046 0.60 -2.7 2,166,192 + Dsui_2046 0.61 -0.4 2,166,361 + +1.0 2,166,454 + +1.6 2,166,505 - Dsui_2046 0.80 -0.4 2,166,505 - Dsui_2046 0.80 +1.8 2,166,535 + +0.8 2,166,570 + Dsui_2046 0.83 +0.8 2,166,573 - Dsui_2046 0.84 +0.8 2,166,751 - +1.2 2,166,786 - -0.2 2,166,786 - -0.4 2,167,001 + -1.0 2,167,021 - +2.6 2,167,222 + Dsui_2047 0.15 -0.0 2,167,302 - +0.6 2,167,369 + +1.0 2,167,377 - +1.0 2,167,412 + Dsui_2047 0.29 +0.2 2,167,471 + Dsui_2047 0.33 +0.2 2,167,471 + +1.2 2,167,479 - +3.2 2,167,570 + Dsui_2047 0.40 +1.0 2,167,736 + Dsui_2047 0.52 -0.8
Or see this region's nucleotide sequence