Strain Fitness in Dechlorosoma suillum PS around Dsui_1910

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1908 and Dsui_1910 are separated by 362 nucleotidesDsui_1910 and Dsui_1911 are separated by 134 nucleotides Dsui_1908: Dsui_1908 - putative Fe-S-cluster redox enzyme, at 2,011,340 to 2,012,671 _1908 Dsui_1910: Dsui_1910 - hypothetical protein, at 2,013,034 to 2,013,381 _1910 Dsui_1911: Dsui_1911 - ParB-like partition protein, at 2,013,516 to 2,014,454 _1911 Position (kb) 2013 2014Strain fitness (log2 ratio) -1 0 1 2at 2012.070 kb on + strand, within Dsui_1908at 2012.100 kb on + strand, within Dsui_1908at 2012.265 kb on + strand, within Dsui_1908at 2012.488 kb on - strand, within Dsui_1908at 2012.519 kb on + strand, within Dsui_1908at 2012.704 kb on - strandat 2012.704 kb on - strandat 2012.724 kb on + strandat 2012.724 kb on + strandat 2013.264 kb on + strand, within Dsui_1910at 2013.406 kb on - strandat 2013.443 kb on + strandat 2013.615 kb on - strand, within Dsui_1911at 2013.807 kb on + strandat 2013.862 kb on + strand, within Dsui_1911at 2014.025 kb on - strand, within Dsui_1911at 2014.025 kb on - strand, within Dsui_1911at 2014.100 kb on - strand, within Dsui_1911at 2014.140 kb on + strandat 2014.208 kb on - strand, within Dsui_1911at 2014.342 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,012,070 + Dsui_1908 0.55 +1.3
2,012,100 + Dsui_1908 0.57 -0.1
2,012,265 + Dsui_1908 0.69 +0.0
2,012,488 - Dsui_1908 0.86 +1.3
2,012,519 + Dsui_1908 0.89 +0.1
2,012,704 - +0.1
2,012,704 - -0.2
2,012,724 + +0.3
2,012,724 + -0.2
2,013,264 + Dsui_1910 0.66 +0.2
2,013,406 - +1.3
2,013,443 + -0.5
2,013,615 - Dsui_1911 0.11 +0.5
2,013,807 + +0.6
2,013,862 + Dsui_1911 0.37 +1.6
2,014,025 - Dsui_1911 0.54 +1.1
2,014,025 - Dsui_1911 0.54 +0.8
2,014,100 - Dsui_1911 0.62 -0.2
2,014,140 + +2.6
2,014,208 - Dsui_1911 0.74 +0.7
2,014,342 + +1.6

Or see this region's nucleotide sequence