Strain Fitness in Dechlorosoma suillum PS around Dsui_1606

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1605 and Dsui_1606 are separated by 253 nucleotidesDsui_1606 and Dsui_1607 are separated by 102 nucleotides Dsui_1605: Dsui_1605 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 1,687,916 to 1,689,505 _1605 Dsui_1606: Dsui_1606 - periplasmic serine protease, Do/DeqQ family, at 1,689,759 to 1,691,252 _1606 Dsui_1607: Dsui_1607 - putative membrane-associated protein, at 1,691,355 to 1,692,332 _1607 Position (kb) 1689 1690 1691 1692Strain fitness (log2 ratio) -1 0 1 2 3at 1688.820 kb on + strandat 1688.865 kb on - strandat 1688.917 kb on + strandat 1689.044 kb on + strand, within Dsui_1605at 1689.198 kb on + strandat 1689.214 kb on - strandat 1689.371 kb on - strandat 1689.483 kb on - strandat 1689.494 kb on + strandat 1689.616 kb on - strandat 1689.720 kb on + strandat 1689.720 kb on + strandat 1689.730 kb on - strandat 1689.735 kb on - strandat 1689.749 kb on + strandat 1689.862 kb on - strandat 1689.914 kb on + strand, within Dsui_1606at 1690.056 kb on + strand, within Dsui_1606at 1690.298 kb on - strandat 1690.394 kb on - strandat 1690.434 kb on - strand, within Dsui_1606at 1690.711 kb on + strand, within Dsui_1606at 1690.837 kb on + strand, within Dsui_1606at 1690.856 kb on + strand, within Dsui_1606at 1690.997 kb on + strand, within Dsui_1606at 1691.048 kb on - strandat 1691.208 kb on - strandat 1691.262 kb on + strandat 1691.270 kb on - strandat 1691.324 kb on + strandat 1691.687 kb on + strand, within Dsui_1607at 1691.783 kb on - strand, within Dsui_1607at 1691.936 kb on + strand, within Dsui_1607at 1691.962 kb on - strand, within Dsui_1607

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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1,688,820 + +3.1
1,688,865 - +1.5
1,688,917 + +0.4
1,689,044 + Dsui_1605 0.71 -0.0
1,689,198 + +0.9
1,689,214 - +2.5
1,689,371 - +0.2
1,689,483 - +0.2
1,689,494 + +0.9
1,689,616 - +1.2
1,689,720 + +1.4
1,689,720 + +0.5
1,689,730 - +0.2
1,689,735 - +1.5
1,689,749 + +0.9
1,689,862 - +1.5
1,689,914 + Dsui_1606 0.10 +0.5
1,690,056 + Dsui_1606 0.20 +3.3
1,690,298 - +1.5
1,690,394 - +1.5
1,690,434 - Dsui_1606 0.45 -0.8
1,690,711 + Dsui_1606 0.64 +0.3
1,690,837 + Dsui_1606 0.72 -1.0
1,690,856 + Dsui_1606 0.73 +0.5
1,690,997 + Dsui_1606 0.83 +0.4
1,691,048 - +2.5
1,691,208 - +0.9
1,691,262 + -0.5
1,691,270 - +0.9
1,691,324 + +0.8
1,691,687 + Dsui_1607 0.34 +1.0
1,691,783 - Dsui_1607 0.44 -1.5
1,691,936 + Dsui_1607 0.59 +0.3
1,691,962 - Dsui_1607 0.62 -0.6

Or see this region's nucleotide sequence