Strain Fitness in Dechlorosoma suillum PS around Dsui_1519

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1518 and Dsui_1519 are separated by 33 nucleotidesDsui_1519 and Dsui_1520 are separated by 86 nucleotidesDsui_1520 and Dsui_1521 are separated by 72 nucleotidesDsui_1521 and Dsui_1522 are separated by 14 nucleotides Dsui_1518: Dsui_1518 - putative permease, at 1,580,859 to 1,581,980 _1518 Dsui_1519: Dsui_1519 - phosphoribosylaminoimidazole synthetase, at 1,582,014 to 1,583,063 _1519 Dsui_1520: Dsui_1520 - cytochrome c551/c552, at 1,583,150 to 1,583,467 _1520 Dsui_1521: Dsui_1521 - hypothetical protein, at 1,583,540 to 1,583,995 _1521 Dsui_1522: Dsui_1522 - serine/threonine protein kinase, at 1,584,010 to 1,585,344 _1522 Position (kb) 1582 1583 1584Strain fitness (log2 ratio) -2 -1 0 1 2at 1581.051 kb on - strand, within Dsui_1518at 1581.150 kb on + strand, within Dsui_1518at 1581.202 kb on - strand, within Dsui_1518at 1581.204 kb on - strand, within Dsui_1518at 1581.245 kb on + strand, within Dsui_1518at 1581.245 kb on + strand, within Dsui_1518at 1581.253 kb on - strand, within Dsui_1518at 1581.259 kb on - strand, within Dsui_1518at 1581.341 kb on + strand, within Dsui_1518at 1581.394 kb on - strand, within Dsui_1518at 1581.464 kb on + strandat 1581.632 kb on - strand, within Dsui_1518at 1581.910 kb on - strandat 1583.062 kb on - strandat 1583.084 kb on + strandat 1583.087 kb on - strandat 1583.150 kb on - strandat 1583.150 kb on - strandat 1583.182 kb on + strand, within Dsui_1520at 1583.241 kb on - strand, within Dsui_1520at 1583.241 kb on - strand, within Dsui_1520at 1583.261 kb on + strand, within Dsui_1520at 1583.271 kb on + strand, within Dsui_1520at 1583.274 kb on - strand, within Dsui_1520at 1583.291 kb on + strand, within Dsui_1520at 1583.314 kb on - strand, within Dsui_1520at 1583.426 kb on + strand, within Dsui_1520at 1583.438 kb on - strandat 1583.469 kb on - strandat 1583.485 kb on - strandat 1583.485 kb on - strandat 1583.645 kb on + strand, within Dsui_1521at 1583.675 kb on + strandat 1583.708 kb on + strand, within Dsui_1521at 1583.732 kb on - strand, within Dsui_1521at 1583.785 kb on - strand, within Dsui_1521at 1583.974 kb on + strandat 1584.001 kb on - strandat 1584.030 kb on + strandat 1584.062 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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1,581,051 - Dsui_1518 0.17 -0.1
1,581,150 + Dsui_1518 0.26 -0.2
1,581,202 - Dsui_1518 0.31 -1.2
1,581,204 - Dsui_1518 0.31 -0.9
1,581,245 + Dsui_1518 0.34 -0.9
1,581,245 + Dsui_1518 0.34 -1.2
1,581,253 - Dsui_1518 0.35 -0.1
1,581,259 - Dsui_1518 0.36 -1.6
1,581,341 + Dsui_1518 0.43 -0.9
1,581,394 - Dsui_1518 0.48 +0.6
1,581,464 + +0.6
1,581,632 - Dsui_1518 0.69 -0.8
1,581,910 - -0.7
1,583,062 - -0.8
1,583,084 + +0.0
1,583,087 - -0.2
1,583,150 - -2.1
1,583,150 - +1.8
1,583,182 + Dsui_1520 0.10 +1.0
1,583,241 - Dsui_1520 0.29 -0.7
1,583,241 - Dsui_1520 0.29 -0.1
1,583,261 + Dsui_1520 0.35 +0.6
1,583,271 + Dsui_1520 0.38 -0.7
1,583,274 - Dsui_1520 0.39 -0.6
1,583,291 + Dsui_1520 0.44 -0.6
1,583,314 - Dsui_1520 0.52 +0.8
1,583,426 + Dsui_1520 0.87 +0.5
1,583,438 - +0.3
1,583,469 - +0.4
1,583,485 - +0.7
1,583,485 - -0.4
1,583,645 + Dsui_1521 0.23 -0.3
1,583,675 + +0.6
1,583,708 + Dsui_1521 0.37 -0.1
1,583,732 - Dsui_1521 0.42 -2.2
1,583,785 - Dsui_1521 0.54 +0.5
1,583,974 + +1.0
1,584,001 - -0.4
1,584,030 + +0.5
1,584,062 - +0.2

Or see this region's nucleotide sequence