Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1516 and Dsui_1517 are separated by 19 nucleotides Dsui_1517 and Dsui_1518 are separated by 4 nucleotides Dsui_1518 and Dsui_1519 are separated by 33 nucleotides
Dsui_1516: Dsui_1516 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 1,579,489 to 1,580,151
_1516
Dsui_1517: Dsui_1517 - DnaA regulatory inactivator Hda, at 1,580,171 to 1,580,854
_1517
Dsui_1518: Dsui_1518 - putative permease, at 1,580,859 to 1,581,980
_1518
Dsui_1519: Dsui_1519 - phosphoribosylaminoimidazole synthetase, at 1,582,014 to 1,583,063
_1519
Position (kb)
1580
1581
1582 Strain fitness (log2 ratio)
-1
0
1 at 1580.176 kb on - strand at 1580.924 kb on - strand at 1581.051 kb on - strand, within Dsui_1518 at 1581.150 kb on + strand, within Dsui_1518 at 1581.202 kb on - strand, within Dsui_1518 at 1581.204 kb on - strand, within Dsui_1518 at 1581.245 kb on + strand, within Dsui_1518 at 1581.245 kb on + strand, within Dsui_1518 at 1581.253 kb on - strand, within Dsui_1518 at 1581.259 kb on - strand, within Dsui_1518 at 1581.341 kb on + strand, within Dsui_1518 at 1581.394 kb on - strand, within Dsui_1518 at 1581.464 kb on + strand at 1581.632 kb on - strand, within Dsui_1518 at 1581.910 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 1,580,176 - -0.3 1,580,924 - +0.2 1,581,051 - Dsui_1518 0.17 -0.1 1,581,150 + Dsui_1518 0.26 -0.2 1,581,202 - Dsui_1518 0.31 -1.2 1,581,204 - Dsui_1518 0.31 -0.9 1,581,245 + Dsui_1518 0.34 -0.9 1,581,245 + Dsui_1518 0.34 -1.2 1,581,253 - Dsui_1518 0.35 -0.1 1,581,259 - Dsui_1518 0.36 -1.6 1,581,341 + Dsui_1518 0.43 -0.9 1,581,394 - Dsui_1518 0.48 +0.6 1,581,464 + +0.6 1,581,632 - Dsui_1518 0.69 -0.8 1,581,910 - -0.7
Or see this region's nucleotide sequence