Strain Fitness in Dechlorosoma suillum PS around Dsui_1516

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1515 and Dsui_1516 are separated by 70 nucleotidesDsui_1516 and Dsui_1517 are separated by 19 nucleotidesDsui_1517 and Dsui_1518 are separated by 4 nucleotides Dsui_1515: Dsui_1515 - poly(A) polymerase, at 1,578,033 to 1,579,418 _1515 Dsui_1516: Dsui_1516 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 1,579,489 to 1,580,151 _1516 Dsui_1517: Dsui_1517 - DnaA regulatory inactivator Hda, at 1,580,171 to 1,580,854 _1517 Dsui_1518: Dsui_1518 - putative permease, at 1,580,859 to 1,581,980 _1518 Position (kb) 1579 1580 1581Strain fitness (log2 ratio) -1 0 1at 1578.997 kb on - strand, within Dsui_1515at 1579.071 kb on - strand, within Dsui_1515at 1579.155 kb on - strand, within Dsui_1515at 1579.170 kb on - strand, within Dsui_1515at 1580.176 kb on - strandat 1580.924 kb on - strandat 1581.051 kb on - strand, within Dsui_1518at 1581.150 kb on + strand, within Dsui_1518

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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1,578,997 - Dsui_1515 0.70 -0.4
1,579,071 - Dsui_1515 0.75 +0.3
1,579,155 - Dsui_1515 0.81 +0.6
1,579,170 - Dsui_1515 0.82 -1.0
1,580,176 - -0.3
1,580,924 - +0.2
1,581,051 - Dsui_1518 0.17 -0.1
1,581,150 + Dsui_1518 0.26 -0.2

Or see this region's nucleotide sequence