Strain Fitness in Dechlorosoma suillum PS around Dsui_1304

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1302 and Dsui_1303 are separated by 3 nucleotidesDsui_1303 and Dsui_1304 are separated by 178 nucleotidesDsui_1304 and Dsui_1305 are separated by 226 nucleotides Dsui_1302: Dsui_1302 - RNA polymerase sigma factor, sigma-70 family, at 1,364,980 to 1,365,480 _1302 Dsui_1303: Dsui_1303 - hypothetical protein, at 1,365,484 to 1,365,864 _1303 Dsui_1304: Dsui_1304 - cytochrome c553, at 1,366,043 to 1,366,684 _1304 Dsui_1305: Dsui_1305 - ribosome biogenesis GTP-binding protein YsxC/EngB, at 1,366,911 to 1,367,669 _1305 Position (kb) 1366 1367Strain fitness (log2 ratio) -2 -1 0 1 2at 1365.099 kb on - strand, within Dsui_1302at 1365.099 kb on - strand, within Dsui_1302at 1365.195 kb on + strand, within Dsui_1302at 1365.203 kb on - strand, within Dsui_1302at 1365.203 kb on - strand, within Dsui_1302at 1365.203 kb on - strandat 1365.372 kb on + strand, within Dsui_1302at 1365.380 kb on - strand, within Dsui_1302at 1365.380 kb on - strand, within Dsui_1302at 1365.423 kb on + strand, within Dsui_1302at 1365.569 kb on + strand, within Dsui_1303at 1365.570 kb on - strand, within Dsui_1303at 1365.630 kb on - strand, within Dsui_1303at 1365.740 kb on - strand, within Dsui_1303at 1365.771 kb on + strand, within Dsui_1303at 1365.781 kb on + strand, within Dsui_1303at 1365.842 kb on - strandat 1365.868 kb on + strandat 1365.873 kb on + strandat 1365.878 kb on + strandat 1365.878 kb on + strandat 1365.886 kb on - strandat 1365.949 kb on + strandat 1365.952 kb on + strandat 1365.954 kb on + strandat 1365.957 kb on - strandat 1366.049 kb on - strandat 1366.518 kb on + strand, within Dsui_1304at 1366.521 kb on - strand, within Dsui_1304at 1366.592 kb on - strand, within Dsui_1304at 1366.625 kb on - strandat 1366.628 kb on + strandat 1366.660 kb on - strandat 1366.661 kb on + strandat 1366.669 kb on - strandat 1366.669 kb on - strandat 1366.685 kb on + strandat 1366.694 kb on - strandat 1366.756 kb on + strandat 1366.764 kb on - strandat 1366.771 kb on + strandat 1366.800 kb on + strandat 1366.808 kb on - strandat 1366.812 kb on + strandat 1366.819 kb on + strandat 1366.820 kb on - strandat 1366.820 kb on - strandat 1366.820 kb on - strandat 1366.820 kb on - strandat 1366.825 kb on - strandat 1366.858 kb on + strandat 1366.873 kb on + strandat 1366.909 kb on + strandat 1367.600 kb on + strandat 1367.653 kb on - strandat 1367.653 kb on - strandat 1367.679 kb on + strandat 1367.680 kb on + strandat 1367.681 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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1,365,099 - Dsui_1302 0.24 +0.0
1,365,099 - Dsui_1302 0.24 +0.0
1,365,195 + Dsui_1302 0.43 -0.0
1,365,203 - Dsui_1302 0.45 -0.3
1,365,203 - Dsui_1302 0.45 +0.3
1,365,203 - +1.0
1,365,372 + Dsui_1302 0.78 -1.9
1,365,380 - Dsui_1302 0.80 +0.5
1,365,380 - Dsui_1302 0.80 +1.3
1,365,423 + Dsui_1302 0.88 -0.0
1,365,569 + Dsui_1303 0.22 +0.3
1,365,570 - Dsui_1303 0.23 +0.4
1,365,630 - Dsui_1303 0.38 +2.3
1,365,740 - Dsui_1303 0.67 -0.0
1,365,771 + Dsui_1303 0.75 -0.3
1,365,781 + Dsui_1303 0.78 +0.6
1,365,842 - +1.5
1,365,868 + +0.1
1,365,873 + -1.3
1,365,878 + -0.1
1,365,878 + +2.3
1,365,886 - +0.2
1,365,949 + +0.3
1,365,952 + +0.2
1,365,954 + -1.1
1,365,957 - -1.1
1,366,049 - -0.1
1,366,518 + Dsui_1304 0.74 -0.6
1,366,521 - Dsui_1304 0.74 -0.4
1,366,592 - Dsui_1304 0.86 -0.4
1,366,625 - +0.1
1,366,628 + -0.6
1,366,660 - +0.3
1,366,661 + -0.6
1,366,669 - -1.4
1,366,669 - +2.0
1,366,685 + +0.6
1,366,694 - -0.4
1,366,756 + +0.3
1,366,764 - -0.2
1,366,771 + -0.8
1,366,800 + -0.2
1,366,808 - -0.2
1,366,812 + +0.0
1,366,819 + -1.0
1,366,820 - -0.1
1,366,820 - -0.4
1,366,820 - -0.3
1,366,820 - +0.1
1,366,825 - -0.4
1,366,858 + -0.5
1,366,873 + -0.3
1,366,909 + +0.1
1,367,600 + -0.8
1,367,653 - +0.3
1,367,653 - +0.0
1,367,679 + -0.3
1,367,680 + -0.1
1,367,681 + +0.0

Or see this region's nucleotide sequence