Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1302 and Dsui_1303 are separated by 3 nucleotides Dsui_1303 and Dsui_1304 are separated by 178 nucleotides Dsui_1304 and Dsui_1305 are separated by 226 nucleotides
Dsui_1302: Dsui_1302 - RNA polymerase sigma factor, sigma-70 family, at 1,364,980 to 1,365,480
_1302
Dsui_1303: Dsui_1303 - hypothetical protein, at 1,365,484 to 1,365,864
_1303
Dsui_1304: Dsui_1304 - cytochrome c553, at 1,366,043 to 1,366,684
_1304
Dsui_1305: Dsui_1305 - ribosome biogenesis GTP-binding protein YsxC/EngB, at 1,366,911 to 1,367,669
_1305
Position (kb)
1366
1367 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1365.099 kb on - strand, within Dsui_1302 at 1365.099 kb on - strand, within Dsui_1302 at 1365.195 kb on + strand, within Dsui_1302 at 1365.203 kb on - strand, within Dsui_1302 at 1365.203 kb on - strand, within Dsui_1302 at 1365.203 kb on - strand at 1365.372 kb on + strand, within Dsui_1302 at 1365.380 kb on - strand, within Dsui_1302 at 1365.380 kb on - strand, within Dsui_1302 at 1365.423 kb on + strand, within Dsui_1302 at 1365.569 kb on + strand, within Dsui_1303 at 1365.570 kb on - strand, within Dsui_1303 at 1365.630 kb on - strand, within Dsui_1303 at 1365.740 kb on - strand, within Dsui_1303 at 1365.771 kb on + strand, within Dsui_1303 at 1365.781 kb on + strand, within Dsui_1303 at 1365.842 kb on - strand at 1365.868 kb on + strand at 1365.873 kb on + strand at 1365.878 kb on + strand at 1365.878 kb on + strand at 1365.886 kb on - strand at 1365.949 kb on + strand at 1365.952 kb on + strand at 1365.954 kb on + strand at 1365.957 kb on - strand at 1366.049 kb on - strand at 1366.518 kb on + strand, within Dsui_1304 at 1366.521 kb on - strand, within Dsui_1304 at 1366.592 kb on - strand, within Dsui_1304 at 1366.625 kb on - strand at 1366.628 kb on + strand at 1366.660 kb on - strand at 1366.661 kb on + strand at 1366.669 kb on - strand at 1366.669 kb on - strand at 1366.685 kb on + strand at 1366.694 kb on - strand at 1366.756 kb on + strand at 1366.764 kb on - strand at 1366.771 kb on + strand at 1366.800 kb on + strand at 1366.808 kb on - strand at 1366.812 kb on + strand at 1366.819 kb on + strand at 1366.820 kb on - strand at 1366.820 kb on - strand at 1366.820 kb on - strand at 1366.820 kb on - strand at 1366.825 kb on - strand at 1366.858 kb on + strand at 1366.873 kb on + strand at 1366.909 kb on + strand at 1367.600 kb on + strand at 1367.653 kb on - strand at 1367.653 kb on - strand at 1367.679 kb on + strand at 1367.680 kb on + strand at 1367.681 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 1,365,099 - Dsui_1302 0.24 +0.0 1,365,099 - Dsui_1302 0.24 +0.0 1,365,195 + Dsui_1302 0.43 -0.0 1,365,203 - Dsui_1302 0.45 -0.3 1,365,203 - Dsui_1302 0.45 +0.3 1,365,203 - +1.0 1,365,372 + Dsui_1302 0.78 -1.9 1,365,380 - Dsui_1302 0.80 +0.5 1,365,380 - Dsui_1302 0.80 +1.3 1,365,423 + Dsui_1302 0.88 -0.0 1,365,569 + Dsui_1303 0.22 +0.3 1,365,570 - Dsui_1303 0.23 +0.4 1,365,630 - Dsui_1303 0.38 +2.3 1,365,740 - Dsui_1303 0.67 -0.0 1,365,771 + Dsui_1303 0.75 -0.3 1,365,781 + Dsui_1303 0.78 +0.6 1,365,842 - +1.5 1,365,868 + +0.1 1,365,873 + -1.3 1,365,878 + -0.1 1,365,878 + +2.3 1,365,886 - +0.2 1,365,949 + +0.3 1,365,952 + +0.2 1,365,954 + -1.1 1,365,957 - -1.1 1,366,049 - -0.1 1,366,518 + Dsui_1304 0.74 -0.6 1,366,521 - Dsui_1304 0.74 -0.4 1,366,592 - Dsui_1304 0.86 -0.4 1,366,625 - +0.1 1,366,628 + -0.6 1,366,660 - +0.3 1,366,661 + -0.6 1,366,669 - -1.4 1,366,669 - +2.0 1,366,685 + +0.6 1,366,694 - -0.4 1,366,756 + +0.3 1,366,764 - -0.2 1,366,771 + -0.8 1,366,800 + -0.2 1,366,808 - -0.2 1,366,812 + +0.0 1,366,819 + -1.0 1,366,820 - -0.1 1,366,820 - -0.4 1,366,820 - -0.3 1,366,820 - +0.1 1,366,825 - -0.4 1,366,858 + -0.5 1,366,873 + -0.3 1,366,909 + +0.1 1,367,600 + -0.8 1,367,653 - +0.3 1,367,653 - +0.0 1,367,679 + -0.3 1,367,680 + -0.1 1,367,681 + +0.0
Or see this region's nucleotide sequence