Strain Fitness in Dechlorosoma suillum PS around Dsui_0742

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0741 and Dsui_0742 are separated by 189 nucleotidesDsui_0742 and Dsui_0743 are separated by 88 nucleotidesDsui_0743 and Dsui_0744 are separated by 29 nucleotidesDsui_0744 and Dsui_0745 are separated by 199 nucleotides Dsui_0741: Dsui_0741 - homoserine O-acetyltransferase, at 738,735 to 739,862 _0741 Dsui_0742: Dsui_0742 - phosphoenolpyruvate-protein phosphotransferase, at 740,052 to 741,791 _0742 Dsui_0743: Dsui_0743 - phosphotransferase system HPr (HPr) family protein, at 741,880 to 742,158 _0743 Dsui_0744: Dsui_0744 - phosphotransferase system, mannose/fructose-specific component IIA, at 742,188 to 742,580 _0744 Dsui_0745: Dsui_0745 - membrane-associated lipoprotein involved in thiamine biosynthesis, at 742,780 to 743,820 _0745 Position (kb) 740 741 742Strain fitness (log2 ratio) -2 -1 0 1 2at 739.938 kb on + strandat 739.940 kb on - strandat 739.967 kb on + strandat 739.998 kb on + strandat 740.031 kb on - strandat 740.098 kb on + strandat 740.101 kb on - strandat 740.112 kb on + strandat 740.128 kb on - strandat 740.266 kb on + strand, within Dsui_0742at 740.274 kb on - strand, within Dsui_0742at 740.302 kb on + strand, within Dsui_0742at 740.381 kb on - strand, within Dsui_0742at 740.532 kb on + strand, within Dsui_0742at 740.549 kb on - strand, within Dsui_0742at 740.559 kb on + strand, within Dsui_0742at 740.601 kb on + strand, within Dsui_0742at 740.646 kb on - strand, within Dsui_0742at 740.646 kb on - strand, within Dsui_0742at 740.702 kb on + strand, within Dsui_0742at 740.721 kb on - strand, within Dsui_0742at 740.731 kb on - strand, within Dsui_0742at 740.756 kb on + strand, within Dsui_0742at 740.764 kb on - strand, within Dsui_0742at 740.949 kb on + strand, within Dsui_0742at 740.957 kb on + strand, within Dsui_0742at 740.962 kb on + strand, within Dsui_0742at 740.989 kb on + strand, within Dsui_0742at 740.989 kb on + strand, within Dsui_0742at 741.139 kb on + strand, within Dsui_0742at 741.167 kb on + strandat 741.170 kb on + strand, within Dsui_0742at 741.188 kb on - strand, within Dsui_0742at 741.193 kb on - strand, within Dsui_0742at 741.277 kb on - strand, within Dsui_0742at 741.286 kb on + strand, within Dsui_0742at 741.407 kb on + strand, within Dsui_0742at 741.421 kb on - strand, within Dsui_0742at 741.438 kb on - strand, within Dsui_0742at 741.542 kb on + strand, within Dsui_0742at 741.586 kb on + strand, within Dsui_0742at 741.615 kb on - strand, within Dsui_0742at 741.617 kb on + strand, within Dsui_0742at 741.693 kb on + strandat 741.707 kb on + strandat 741.715 kb on - strandat 741.738 kb on - strandat 741.798 kb on + strandat 741.806 kb on + strandat 741.921 kb on - strand, within Dsui_0743at 741.921 kb on - strand, within Dsui_0743at 741.957 kb on + strand, within Dsui_0743at 741.965 kb on - strand, within Dsui_0743at 742.049 kb on - strand, within Dsui_0743at 742.147 kb on + strandat 742.152 kb on + strandat 742.193 kb on - strandat 742.194 kb on - strandat 742.199 kb on - strandat 742.236 kb on - strand, within Dsui_0744at 742.295 kb on - strand, within Dsui_0744at 742.324 kb on + strand, within Dsui_0744at 742.511 kb on - strand, within Dsui_0744at 742.530 kb on - strand, within Dsui_0744at 742.532 kb on + strand, within Dsui_0744at 742.584 kb on + strandat 742.644 kb on + strandat 742.668 kb on + strandat 742.771 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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739,938 + -0.2
739,940 - -2.1
739,967 + +1.7
739,998 + +0.4
740,031 - +0.5
740,098 + -0.9
740,101 - -0.4
740,112 + -0.5
740,128 - -0.5
740,266 + Dsui_0742 0.12 -2.2
740,274 - Dsui_0742 0.13 -0.4
740,302 + Dsui_0742 0.14 +0.1
740,381 - Dsui_0742 0.19 -1.0
740,532 + Dsui_0742 0.28 +0.8
740,549 - Dsui_0742 0.29 -0.3
740,559 + Dsui_0742 0.29 -0.3
740,601 + Dsui_0742 0.32 -0.0
740,646 - Dsui_0742 0.34 -1.1
740,646 - Dsui_0742 0.34 -0.2
740,702 + Dsui_0742 0.37 +0.2
740,721 - Dsui_0742 0.38 -1.1
740,731 - Dsui_0742 0.39 -0.5
740,756 + Dsui_0742 0.40 -0.8
740,764 - Dsui_0742 0.41 -0.8
740,949 + Dsui_0742 0.52 +0.3
740,957 + Dsui_0742 0.52 -1.0
740,962 + Dsui_0742 0.52 -0.1
740,989 + Dsui_0742 0.54 -0.4
740,989 + Dsui_0742 0.54 -1.0
741,139 + Dsui_0742 0.62 +0.1
741,167 + +0.7
741,170 + Dsui_0742 0.64 -0.1
741,188 - Dsui_0742 0.65 -0.8
741,193 - Dsui_0742 0.66 -0.8
741,277 - Dsui_0742 0.70 +0.1
741,286 + Dsui_0742 0.71 +0.7
741,407 + Dsui_0742 0.78 -1.6
741,421 - Dsui_0742 0.79 -0.7
741,438 - Dsui_0742 0.80 -0.8
741,542 + Dsui_0742 0.86 -0.3
741,586 + Dsui_0742 0.88 -0.8
741,615 - Dsui_0742 0.90 -1.3
741,617 + Dsui_0742 0.90 +0.1
741,693 + -1.2
741,707 + +1.8
741,715 - -0.4
741,738 - -0.9
741,798 + +0.9
741,806 + +0.1
741,921 - Dsui_0743 0.15 -1.0
741,921 - Dsui_0743 0.15 -1.0
741,957 + Dsui_0743 0.28 +0.7
741,965 - Dsui_0743 0.30 -0.2
742,049 - Dsui_0743 0.61 -0.4
742,147 + -1.4
742,152 + +1.4
742,193 - +0.5
742,194 - -0.2
742,199 - +0.4
742,236 - Dsui_0744 0.12 -0.5
742,295 - Dsui_0744 0.27 -0.2
742,324 + Dsui_0744 0.35 +0.3
742,511 - Dsui_0744 0.82 +0.6
742,530 - Dsui_0744 0.87 +1.7
742,532 + Dsui_0744 0.88 -0.5
742,584 + -0.1
742,644 + +0.4
742,668 + -0.9
742,771 - -0.5

Or see this region's nucleotide sequence