Strain Fitness in Dechlorosoma suillum PS around Dsui_0567

Experiment: R2A with sodium pyruvate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0565 and Dsui_0566 are separated by 38 nucleotidesDsui_0566 and Dsui_0567 overlap by 4 nucleotidesDsui_0567 and Dsui_0568 are separated by 168 nucleotides Dsui_0565: Dsui_0565 - hypothetical protein, at 565,253 to 565,639 _0565 Dsui_0566: Dsui_0566 - putative molybdenum utilization protein ModD, at 565,678 to 566,568 _0566 Dsui_0567: Dsui_0567 - molybdenum-pterin binding domain protein, at 566,565 to 567,395 _0567 Dsui_0568: Dsui_0568 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 567,564 to 569,480 _0568 Position (kb) 566 567 568Strain fitness (log2 ratio) -1 0 1 2at 565.573 kb on - strand, within Dsui_0565at 565.587 kb on + strandat 565.984 kb on + strandat 565.992 kb on - strand, within Dsui_0566at 566.194 kb on - strand, within Dsui_0566at 566.276 kb on - strandat 566.332 kb on + strandat 566.340 kb on - strand, within Dsui_0566at 566.562 kb on + strandat 566.792 kb on - strand, within Dsui_0567at 566.851 kb on - strandat 566.913 kb on - strand, within Dsui_0567at 566.987 kb on + strandat 567.157 kb on + strandat 567.275 kb on - strandat 567.360 kb on - strandat 567.360 kb on - strandat 567.360 kb on - strandat 567.360 kb on - strandat 567.390 kb on - strandat 567.440 kb on + strandat 567.453 kb on - strandat 567.695 kb on + strandat 567.840 kb on - strand, within Dsui_0568at 567.880 kb on + strand, within Dsui_0568at 567.948 kb on - strandat 567.979 kb on - strand, within Dsui_0568at 568.225 kb on - strand, within Dsui_0568at 568.313 kb on + strand, within Dsui_0568at 568.313 kb on + strandat 568.321 kb on - strand, within Dsui_0568at 568.359 kb on - strand, within Dsui_0568

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
remove
565,573 - Dsui_0565 0.83 +0.0
565,587 + +2.6
565,984 + +0.6
565,992 - Dsui_0566 0.35 +0.4
566,194 - Dsui_0566 0.58 -1.6
566,276 - +1.6
566,332 + +1.6
566,340 - Dsui_0566 0.74 -0.1
566,562 + +0.6
566,792 - Dsui_0567 0.27 -0.2
566,851 - +2.6
566,913 - Dsui_0567 0.42 -0.5
566,987 + +1.6
567,157 + -0.2
567,275 - +1.6
567,360 - +1.0
567,360 - +2.6
567,360 - +0.0
567,360 - +0.2
567,390 - +0.3
567,440 + +2.6
567,453 - +0.6
567,695 + +0.1
567,840 - Dsui_0568 0.14 -0.7
567,880 + Dsui_0568 0.16 -1.1
567,948 - +0.6
567,979 - Dsui_0568 0.22 -0.4
568,225 - Dsui_0568 0.34 +0.3
568,313 + Dsui_0568 0.39 -0.4
568,313 + +1.6
568,321 - Dsui_0568 0.39 +0.3
568,359 - Dsui_0568 0.41 -1.2

Or see this region's nucleotide sequence