Strain Fitness in Dechlorosoma suillum PS around Dsui_0425

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0424 and Dsui_0425 overlap by 4 nucleotidesDsui_0425 and Dsui_0426 are separated by 6 nucleotides Dsui_0424: Dsui_0424 - phosphoketolase, at 427,689 to 430,109 _0424 Dsui_0425: Dsui_0425 - putative Fe-S oxidoreductase, at 430,106 to 430,381 _0425 Dsui_0426: Dsui_0426 - transcriptional regulator, at 430,388 to 431,302 _0426 Position (kb) 430 431Strain fitness (log2 ratio) -1 0 1at 429.124 kb on + strand, within Dsui_0424at 429.288 kb on - strandat 429.306 kb on - strand, within Dsui_0424at 429.352 kb on + strand, within Dsui_0424at 429.381 kb on + strand, within Dsui_0424at 429.384 kb on - strand, within Dsui_0424at 429.442 kb on + strand, within Dsui_0424at 429.522 kb on + strand, within Dsui_0424at 429.676 kb on + strand, within Dsui_0424at 429.715 kb on + strand, within Dsui_0424at 429.758 kb on + strand, within Dsui_0424at 429.758 kb on + strand, within Dsui_0424at 429.776 kb on - strand, within Dsui_0424at 429.877 kb on + strandat 429.885 kb on - strandat 429.915 kb on - strandat 429.915 kb on - strandat 429.917 kb on + strandat 429.943 kb on + strandat 430.020 kb on - strandat 430.020 kb on - strandat 430.060 kb on + strandat 430.096 kb on - strandat 430.103 kb on + strandat 430.118 kb on + strandat 430.218 kb on + strand, within Dsui_0425at 430.235 kb on + strand, within Dsui_0425at 430.439 kb on + strandat 430.558 kb on + strand, within Dsui_0426at 430.575 kb on + strand, within Dsui_0426at 430.583 kb on - strand, within Dsui_0426at 430.600 kb on - strand, within Dsui_0426at 430.652 kb on + strand, within Dsui_0426at 430.655 kb on - strand, within Dsui_0426at 430.695 kb on - strand, within Dsui_0426at 430.700 kb on - strand, within Dsui_0426at 430.811 kb on - strand, within Dsui_0426at 430.878 kb on - strand, within Dsui_0426at 430.883 kb on - strand, within Dsui_0426at 430.996 kb on - strand, within Dsui_0426at 431.055 kb on + strandat 431.182 kb on + strand, within Dsui_0426at 431.191 kb on - strand, within Dsui_0426at 431.233 kb on - strandat 431.254 kb on - strandat 431.307 kb on - strandat 431.310 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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429,124 + Dsui_0424 0.59 -0.2
429,288 - +1.6
429,306 - Dsui_0424 0.67 +0.0
429,352 + Dsui_0424 0.69 -0.4
429,381 + Dsui_0424 0.70 -0.4
429,384 - Dsui_0424 0.70 -0.2
429,442 + Dsui_0424 0.72 -0.6
429,522 + Dsui_0424 0.76 -0.4
429,676 + Dsui_0424 0.82 -0.9
429,715 + Dsui_0424 0.84 +0.4
429,758 + Dsui_0424 0.85 +0.7
429,758 + Dsui_0424 0.85 -1.1
429,776 - Dsui_0424 0.86 -0.8
429,877 + -0.4
429,885 - +0.3
429,915 - +1.7
429,915 - +0.4
429,917 + -0.7
429,943 + +1.0
430,020 - +0.5
430,020 - +0.2
430,060 + -0.9
430,096 - +0.2
430,103 + +0.0
430,118 + -0.6
430,218 + Dsui_0425 0.41 -0.7
430,235 + Dsui_0425 0.47 +0.6
430,439 + -0.3
430,558 + Dsui_0426 0.19 -0.0
430,575 + Dsui_0426 0.20 +0.2
430,583 - Dsui_0426 0.21 -0.1
430,600 - Dsui_0426 0.23 -0.1
430,652 + Dsui_0426 0.29 -0.1
430,655 - Dsui_0426 0.29 -0.3
430,695 - Dsui_0426 0.34 +0.1
430,700 - Dsui_0426 0.34 -0.9
430,811 - Dsui_0426 0.46 +0.6
430,878 - Dsui_0426 0.54 -0.4
430,883 - Dsui_0426 0.54 +0.1
430,996 - Dsui_0426 0.66 -0.3
431,055 + +0.2
431,182 + Dsui_0426 0.87 +0.3
431,191 - Dsui_0426 0.88 -0.7
431,233 - +0.0
431,254 - +1.2
431,307 - +0.6
431,310 - -0.3

Or see this region's nucleotide sequence