Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0389 and Dsui_0390 are separated by 6 nucleotides Dsui_0390 and Dsui_0391 overlap by 4 nucleotides Dsui_0391 and Dsui_0392 are separated by 96 nucleotides Dsui_0392 and Dsui_0393 are separated by 73 nucleotides
Dsui_0389: Dsui_0389 - acetyl-CoA carboxylase, biotin carboxylase subunit, at 387,629 to 388,996
_0389
Dsui_0390: Dsui_0390 - ribosomal protein L11 methyltransferase, at 389,003 to 389,890
_0390
Dsui_0391: Dsui_0391 - Protein of unknown function (DUF3426), at 389,887 to 390,879
_0391
Dsui_0392: Dsui_0392 - diacylglycerol kinase, at 390,976 to 391,362
_0392
Dsui_0393: Dsui_0393 - glycosyltransferase, at 391,436 to 392,680
_0393
Position (kb) 389
390
391 Strain fitness (log2 ratio) -1
0
1
2
3 at 389.051 kb on + strand at 389.128 kb on - strand, within Dsui_0390 at 389.176 kb on - strand, within Dsui_0390 at 389.205 kb on - strand, within Dsui_0390 at 389.301 kb on + strand, within Dsui_0390 at 389.309 kb on - strand, within Dsui_0390 at 389.323 kb on + strand, within Dsui_0390 at 389.350 kb on + strand, within Dsui_0390 at 389.455 kb on + strand, within Dsui_0390 at 389.468 kb on - strand at 389.611 kb on + strand, within Dsui_0390 at 389.619 kb on - strand, within Dsui_0390 at 389.706 kb on - strand, within Dsui_0390 at 389.739 kb on - strand, within Dsui_0390 at 389.741 kb on + strand, within Dsui_0390 at 389.781 kb on - strand, within Dsui_0390 at 389.904 kb on + strand at 389.912 kb on - strand at 389.927 kb on + strand at 389.947 kb on - strand at 389.947 kb on - strand at 389.957 kb on - strand at 389.957 kb on - strand at 389.957 kb on - strand at 390.139 kb on - strand, within Dsui_0391 at 390.192 kb on + strand, within Dsui_0391 at 390.905 kb on + strand at 390.908 kb on - strand at 390.913 kb on - strand at 390.961 kb on + strand at 390.966 kb on - strand at 391.003 kb on - strand at 391.020 kb on - strand, within Dsui_0392 at 391.030 kb on + strand, within Dsui_0392 at 391.047 kb on + strand, within Dsui_0392 at 391.050 kb on - strand at 391.055 kb on - strand, within Dsui_0392 at 391.133 kb on - strand, within Dsui_0392 at 391.166 kb on + strand, within Dsui_0392 at 391.170 kb on + strand, within Dsui_0392 at 391.179 kb on - strand, within Dsui_0392 at 391.204 kb on + strand at 391.343 kb on + strand at 391.483 kb on - strand at 391.562 kb on + strand at 391.564 kb on - strand, within Dsui_0393 at 391.724 kb on - strand, within Dsui_0393 at 391.748 kb on + strand at 391.778 kb on + strand, within Dsui_0393 at 391.799 kb on + strand, within Dsui_0393 at 391.807 kb on - strand, within Dsui_0393
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 389,051 + -0.3 389,128 - Dsui_0390 0.14 +0.3 389,176 - Dsui_0390 0.19 -0.3 389,205 - Dsui_0390 0.23 +0.1 389,301 + Dsui_0390 0.34 -0.9 389,309 - Dsui_0390 0.34 -0.7 389,323 + Dsui_0390 0.36 +0.0 389,350 + Dsui_0390 0.39 -0.2 389,455 + Dsui_0390 0.51 -0.1 389,468 - -0.2 389,611 + Dsui_0390 0.68 +0.3 389,619 - Dsui_0390 0.69 +0.2 389,706 - Dsui_0390 0.79 -1.0 389,739 - Dsui_0390 0.83 -1.5 389,741 + Dsui_0390 0.83 -0.3 389,781 - Dsui_0390 0.88 -0.2 389,904 + +0.0 389,912 - +0.5 389,927 + -0.2 389,947 - -0.2 389,947 - -0.7 389,957 - +0.2 389,957 - +1.6 389,957 - +0.5 390,139 - Dsui_0391 0.25 +0.3 390,192 + Dsui_0391 0.31 -1.3 390,905 + +0.2 390,908 - -0.4 390,913 - +0.1 390,961 + +0.5 390,966 - -0.1 391,003 - +0.9 391,020 - Dsui_0392 0.11 -0.1 391,030 + Dsui_0392 0.14 +0.3 391,047 + Dsui_0392 0.18 +1.0 391,050 - +3.2 391,055 - Dsui_0392 0.20 +0.3 391,133 - Dsui_0392 0.41 -0.2 391,166 + Dsui_0392 0.49 +0.7 391,170 + Dsui_0392 0.50 +1.2 391,179 - Dsui_0392 0.52 +0.3 391,204 + +0.0 391,343 + +2.6 391,483 - +1.0 391,562 + +2.6 391,564 - Dsui_0393 0.10 +0.1 391,724 - Dsui_0393 0.23 +0.1 391,748 + +0.3 391,778 + Dsui_0393 0.27 -0.6 391,799 + Dsui_0393 0.29 -0.4 391,807 - Dsui_0393 0.30 -0.3
Or see this region's nucleotide sequence