Strain Fitness in Dechlorosoma suillum PS around Dsui_0175

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0173 and Dsui_0174 overlap by 4 nucleotidesDsui_0174 and Dsui_0175 overlap by 1 nucleotidesDsui_0175 and Dsui_0176 are separated by 2 nucleotidesDsui_0176 and Dsui_0177 are separated by 171 nucleotides Dsui_0173: Dsui_0173 - site-specific DNA methylase, at 175,738 to 177,546 _0173 Dsui_0174: Dsui_0174 - hypothetical protein, at 177,543 to 178,073 _0174 Dsui_0175: Dsui_0175 - hypothetical protein, at 178,073 to 179,881 _0175 Dsui_0176: Dsui_0176 - ribosome modulation factor, at 179,884 to 180,588 _0176 Dsui_0177: Dsui_0177 - hypothetical protein, at 180,760 to 181,641 _0177 Position (kb) 178 179 180Strain fitness (log2 ratio) -1 0 1 2at 177.139 kb on + strandat 177.195 kb on + strandat 177.200 kb on + strandat 177.336 kb on + strand, within Dsui_0173at 177.443 kb on + strandat 177.534 kb on - strandat 177.649 kb on - strandat 177.705 kb on + strandat 177.766 kb on + strand, within Dsui_0174at 177.774 kb on - strand, within Dsui_0174at 177.787 kb on + strand, within Dsui_0174at 177.945 kb on + strand, within Dsui_0174at 177.995 kb on - strandat 178.228 kb on + strandat 178.265 kb on + strand, within Dsui_0175at 178.349 kb on + strand, within Dsui_0175at 178.354 kb on + strand, within Dsui_0175at 178.371 kb on - strand, within Dsui_0175at 178.847 kb on - strandat 179.097 kb on + strand, within Dsui_0175at 179.313 kb on + strand, within Dsui_0175at 179.358 kb on - strandat 179.510 kb on + strand, within Dsui_0175at 179.690 kb on + strandat 179.698 kb on - strandat 179.728 kb on - strandat 179.738 kb on + strandat 179.776 kb on + strandat 179.840 kb on + strandat 179.851 kb on - strandat 179.930 kb on + strandat 180.027 kb on - strandat 180.077 kb on + strand, within Dsui_0176at 180.195 kb on + strand, within Dsui_0176at 180.288 kb on - strand, within Dsui_0176at 180.365 kb on - strandat 180.403 kb on - strand, within Dsui_0176at 180.470 kb on + strand, within Dsui_0176at 180.470 kb on + strandat 180.478 kb on - strandat 180.478 kb on - strand, within Dsui_0176at 180.726 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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177,139 + +1.6
177,195 + +0.6
177,200 + +2.6
177,336 + Dsui_0173 0.88 +0.5
177,443 + +1.6
177,534 - +0.6
177,649 - +1.6
177,705 + +2.6
177,766 + Dsui_0174 0.42 -0.7
177,774 - Dsui_0174 0.44 +0.5
177,787 + Dsui_0174 0.46 +0.8
177,945 + Dsui_0174 0.76 -0.2
177,995 - +1.3
178,228 + +0.3
178,265 + Dsui_0175 0.11 -0.5
178,349 + Dsui_0175 0.15 +0.3
178,354 + Dsui_0175 0.16 +0.0
178,371 - Dsui_0175 0.16 -1.6
178,847 - +2.6
179,097 + Dsui_0175 0.57 +1.8
179,313 + Dsui_0175 0.69 +2.0
179,358 - +1.0
179,510 + Dsui_0175 0.79 +0.3
179,690 + +1.0
179,698 - +1.0
179,728 - +1.0
179,738 + -0.3
179,776 + +1.4
179,840 + -0.2
179,851 - +1.3
179,930 + -0.4
180,027 - +1.0
180,077 + Dsui_0176 0.27 -0.7
180,195 + Dsui_0176 0.44 -0.1
180,288 - Dsui_0176 0.57 -0.8
180,365 - +0.3
180,403 - Dsui_0176 0.74 +0.8
180,470 + Dsui_0176 0.83 -1.3
180,470 + +0.0
180,478 - +0.0
180,478 - Dsui_0176 0.84 +0.5
180,726 - +0.5

Or see this region's nucleotide sequence