Strain Fitness in Shewanella amazonensis SB2B around Sama_3519

Experiment: Cytidine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine
4,152,228	-		Sama_3518	0.10	-0.7
4,152,303	+		Sama_3518	0.19	-1.3
4,152,331	+		Sama_3518	0.22	+0.8
4,152,331	+		Sama_3518	0.22	-1.7
4,152,331	+		Sama_3518	0.22	-0.3
4,152,331	+		Sama_3518	0.22	+0.0
4,152,331	+		Sama_3518	0.22	+0.5
4,152,331	+		Sama_3518	0.22	+1.0
4,152,331	+		Sama_3518	0.22	-0.5
4,152,331	+		Sama_3518	0.22	+0.4
4,152,331	+		Sama_3518	0.22	+0.4
4,152,332	-		Sama_3518	0.22	+0.6
4,152,332	-		Sama_3518	0.22	+0.6
4,152,332	-		Sama_3518	0.22	-1.3
4,152,332	-		Sama_3518	0.22	-1.3
4,152,333	-		Sama_3518	0.22	-1.1
4,152,409	+		Sama_3518	0.31	+1.1
4,152,409	+		Sama_3518	0.31	+0.4
4,152,410	-		Sama_3518	0.31	-0.4
4,152,423	+		Sama_3518	0.32	+0.9
4,152,423	+		Sama_3518	0.32	-0.2
4,152,423	+		Sama_3518	0.32	+0.4
4,152,524	+		Sama_3518	0.44	+0.8
4,152,524	+		Sama_3518	0.44	-1.2
4,152,524	+		Sama_3518	0.44	+0.3
4,152,524	+		Sama_3518	0.44	+0.2
4,152,524	+		Sama_3518	0.44	-0.7
4,152,524	+		Sama_3518	0.44	+0.9
4,152,525	-		Sama_3518	0.44	-0.1
4,152,525	-		Sama_3518	0.44	-0.2
4,152,525	-		Sama_3518	0.44	-0.8
4,152,525	-		Sama_3518	0.44	-0.2
4,152,525	-		Sama_3518	0.44	-2.2
4,152,525	-		Sama_3518	0.44	-0.1
4,152,525	-		Sama_3518	0.44	+0.6
4,152,525	-		Sama_3518	0.44	-0.5
4,152,525	-		Sama_3518	0.44	+0.4
4,152,526	+		Sama_3518	0.44	+1.0
4,152,526	+		Sama_3518	0.44	+0.2
4,152,526	+		Sama_3518	0.44	+0.4
4,152,527	-		Sama_3518	0.44	+0.9
4,152,631	+		Sama_3518	0.56	+0.1
4,152,631	+		Sama_3518	0.56	-0.3
4,152,631	+		Sama_3518	0.56	+0.4
4,152,632	-		Sama_3518	0.56	+0.3
4,152,632	-		Sama_3518	0.56	+0.1
4,152,632	-		Sama_3518	0.56	+0.0
4,152,640	+		Sama_3518	0.57	-0.1
4,152,641	-		Sama_3518	0.57	+0.3
4,152,641	-		Sama_3518	0.57	+0.4
4,152,641	-		Sama_3518	0.57	-0.2
4,152,689	+		Sama_3518	0.62	+0.7
4,152,727	+		Sama_3518	0.67	+0.5
4,152,761	+		Sama_3518	0.71	-0.8
4,152,761	+		Sama_3518	0.71	+1.9
4,152,761	+		Sama_3518	0.71	+1.0
4,152,761	+		Sama_3518	0.71	-0.2
4,152,762	-		Sama_3518	0.71	-0.2
4,152,815	-		Sama_3518	0.77	+0.0
4,152,836	+		Sama_3518	0.79	+0.0
4,152,836	+		Sama_3518	0.79	+0.0
4,152,837	-		Sama_3518	0.79	+0.4
4,152,837	-		Sama_3518	0.79	-0.4
4,152,837	-		Sama_3518	0.79	-0.5
4,152,837	-		Sama_3518	0.79	+0.5
4,152,837	-		Sama_3518	0.79	-0.1
4,152,918	+		Sama_3518	0.89	+0.7
4,152,918	+		Sama_3518	0.89	+0.6
4,152,918	+		Sama_3518	0.89	-0.2
4,152,918	+		Sama_3518	0.89	+0.1
4,152,919	-		Sama_3518	0.89	-2.2
4,152,919	-		Sama_3518	0.89	-0.1
4,152,919	-		Sama_3518	0.89	+0.3
4,152,919	-		Sama_3518	0.89	+0.8
4,152,940	+				-0.4
4,152,940	+				+0.8
4,152,940	+				-0.3
4,152,958	+				+1.1
4,152,958	+				+0.5
4,152,958	+				-0.2
4,152,958	+				+0.6
4,152,959	-				-1.0
4,152,994	+				+0.4
4,152,994	+				+1.1
4,152,994	+				+0.0
4,152,994	+				+0.3
4,152,995	-				-0.0
4,152,995	-				+0.3
4,152,995	-				-0.4
4,152,995	-				+0.1
4,153,016	+				+1.1
4,153,016	+				+1.0
4,153,016	+				+0.5
4,153,017	-				+0.1
4,153,017	-				-0.3
4,153,017	-				-0.3
4,153,017	-				-0.1
4,153,017	-				+0.0
4,153,019	+				+1.7
4,153,019	+				-0.6
4,153,019	+				+0.4
4,153,019	+				+0.6
4,153,019	+				-0.4
4,153,019	+				-0.4
4,153,020	-				+0.7
4,153,020	-				+0.5
4,153,020	-				+0.2
4,153,020	-				+0.4
4,153,020	-				-0.4
4,153,020	-				-0.6
4,153,020	-				-0.4
4,153,020	-				+0.1
4,153,020	-				+0.6
4,153,020	-				+0.1
4,153,020	-				+0.5
4,153,020	-				-0.9
4,153,020	-				-1.6
4,153,021	+				+0.7
4,153,021	+				-1.0
4,153,021	+				-0.4
4,153,021	+				-0.7
4,153,021	+				+0.5
4,153,021	+				+0.7
4,153,021	+				-0.6
4,153,021	+				+0.4
4,153,021	+				-1.0
4,153,022	-				-0.1
4,153,022	-				-1.2
4,153,022	-				-1.4
4,153,022	-				-0.5
4,153,022	-				+0.3
4,153,022	-				-0.0
4,153,022	-				+0.9
4,153,022	-				+0.3
4,153,022	-				-0.3
4,153,022	-				-0.4
4,153,022	-				+0.5
4,153,022	-				-0.3
4,153,090	+				-1.4
4,153,090	+				-0.6
4,153,090	+				+0.0
4,153,090	+				+0.4
4,153,091	-				+0.0
4,153,091	-				+0.1
4,153,091	-				+0.4
4,153,140	+				-0.1
4,153,140	+				-0.3
4,153,141	-				-0.3
4,153,141	-				-0.6
4,153,141	-				-0.6
4,153,141	-				+0.3
4,153,158	+				-1.2
4,153,158	+				+0.5
4,153,158	+				+0.3
4,153,181	+				-0.5
4,153,181	+				+0.1
4,153,182	-				+0.0
4,153,182	-				+0.2
4,153,182	-				+1.3
4,153,182	-				-0.9
4,153,252	+				-0.2
4,153,252	+				+0.6
4,153,252	+				-0.8
4,153,253	-				+0.5
4,153,262	+				+0.1
4,153,262	+				-0.9
4,153,262	+				-0.6
4,153,263	-				+0.1
4,153,263	-				+0.2
4,153,287	+		Sama_3519	0.14	-0.0
4,153,312	+		Sama_3519	0.18	-1.2
4,153,312	+		Sama_3519	0.18	-2.3
4,153,320	+		Sama_3519	0.20	+0.3
4,153,320	+		Sama_3519	0.20	+0.2
4,153,321	-		Sama_3519	0.20	-0.4
4,153,321	-		Sama_3519	0.20	+1.3
4,153,321	-		Sama_3519	0.20	+1.4
4,153,321	-		Sama_3519	0.20	+1.0
4,153,321	-		Sama_3519	0.20	+1.3
4,153,321	-		Sama_3519	0.20	-1.1
4,153,322	+		Sama_3519	0.20	-0.7
4,153,322	+		Sama_3519	0.20	-0.6
4,153,323	-		Sama_3519	0.20	-0.9
4,153,377	+		Sama_3519	0.30	-0.2
4,153,417	+		Sama_3519	0.37	+0.5
4,153,417	+		Sama_3519	0.37	+0.2
4,153,417	+		Sama_3519	0.37	+0.4
4,153,418	-		Sama_3519	0.37	+0.0
4,153,418	-		Sama_3519	0.37	+0.2
4,153,498	+		Sama_3519	0.52	+0.4
4,153,499	-		Sama_3519	0.52	-0.4
4,153,499	-		Sama_3519	0.52	-0.3
4,153,568	+		Sama_3519	0.64	+0.0
4,153,568	+		Sama_3519	0.64	+0.8
4,153,569	-		Sama_3519	0.65	+0.8
4,153,569	-		Sama_3519	0.65	-0.8
4,153,572	+		Sama_3519	0.65	-0.5
4,153,572	+		Sama_3519	0.65	-0.2
4,153,572	+		Sama_3519	0.65	-1.0
4,153,572	+		Sama_3519	0.65	+1.0
4,153,572	+		Sama_3519	0.65	+0.1
4,153,572	+		Sama_3519	0.65	-0.3
4,153,573	-		Sama_3519	0.65	+0.1
4,153,573	-		Sama_3519	0.65	+0.4
4,153,573	-		Sama_3519	0.65	-0.3
4,153,573	-		Sama_3519	0.65	-0.6
4,153,670	+		Sama_3519	0.83	+1.1
4,153,671	-		Sama_3519	0.83	+0.6
4,153,702	+		Sama_3519	0.88	-0.8
4,153,702	+		Sama_3519	0.88	-0.4
4,153,702	+		Sama_3519	0.88	-0.7
4,153,703	-		Sama_3519	0.89	+0.0
4,153,703	-		Sama_3519	0.89	+1.4
4,153,751	+				+0.3
4,153,752	-				-0.2
4,153,823	+				+0.0
4,153,837	-				+1.6
4,153,837	-				+1.5
4,153,837	-				+0.6
4,153,881	-		Sama_3520	0.11	+0.1
4,153,881	-		Sama_3520	0.11	+0.2
4,154,007	+		Sama_3520	0.30	+0.5
4,154,008	-		Sama_3520	0.30	+0.0
4,154,008	-		Sama_3520	0.30	+0.7
4,154,047	+		Sama_3520	0.35	+0.4
4,154,079	-		Sama_3520	0.40	-0.1
4,154,108	+		Sama_3520	0.44	+0.7
4,154,108	+		Sama_3520	0.44	+0.7
4,154,117	+		Sama_3520	0.46	-1.2
4,154,136	-		Sama_3520	0.48	-0.9
4,154,149	+		Sama_3520	0.50	-0.2
4,154,149	+		Sama_3520	0.50	-1.3
4,154,150	-		Sama_3520	0.50	+1.1
4,154,150	-		Sama_3520	0.50	-0.2
4,154,174	+		Sama_3520	0.54	+0.2
4,154,185	+		Sama_3520	0.55	+0.6
4,154,185	+		Sama_3520	0.55	-1.6
4,154,185	+		Sama_3520	0.55	+1.6
4,154,247	+		Sama_3520	0.64	-1.2
4,154,247	+		Sama_3520	0.64	+1.0
4,154,248	-		Sama_3520	0.64	-0.4
4,154,285	+		Sama_3520	0.70	-0.4
4,154,343	+		Sama_3520	0.78	-0.6
4,154,343	+		Sama_3520	0.78	+0.6
4,154,343	+		Sama_3520	0.78	-0.2
4,154,343	+		Sama_3520	0.78	-0.7
4,154,344	-		Sama_3520	0.78	+0.1
4,154,344	-		Sama_3520	0.78	-1.2
4,154,344	-		Sama_3520	0.78	+0.4
4,154,356	-		Sama_3520	0.80	-0.3
4,154,417	+		Sama_3520	0.89	-0.7
4,154,417	+		Sama_3520	0.89	+1.6
4,154,418	-		Sama_3520	0.89	+0.2
4,154,490	+				-1.5
4,154,496	+				+0.5
4,154,496	+				-0.4
4,154,496	+				-0.1
4,154,496	+				-0.3
4,154,496	+				+0.3
4,154,497	-				+2.3
4,154,497	-				+0.4
4,154,497	-				+0.2
4,154,497	-				-1.2
4,154,497	-				+0.2
4,154,518	+				-1.0
4,154,518	+				+0.4
4,154,518	+				-1.6
4,154,518	+				+0.6
4,154,518	+				+0.7
4,154,518	+				+0.7
4,154,519	-				+0.5
4,154,554	+				-0.1
4,154,587	+				+1.2
4,154,607	+				+1.1
4,154,607	+				+0.2
4,154,608	-				+0.5
4,154,608	-				+0.0
4,154,608	-				+0.9
4,154,616	+				+0.6
4,154,616	+				-0.2
4,154,616	+				+0.6
4,154,616	+				-0.4
4,154,616	+				-0.3
4,154,616	+				-1.6
4,154,616	+				-0.0
4,154,617	-				+0.2
4,154,617	-				+0.0
4,154,617	-				+0.8
4,154,617	-				-0.4
4,154,617	-				-0.7
4,154,617	-				+0.6
4,154,617	-				-0.6
4,154,617	-				-1.7
4,154,617	-				-1.7
4,154,637	+				-0.2
4,154,638	-				+0.2
4,154,638	-				+0.1
4,154,655	+		Sama_3521	0.13	+0.5
4,154,655	+		Sama_3521	0.13	+0.2
4,154,655	+		Sama_3521	0.13	+0.3
4,154,655	+		Sama_3521	0.13	-0.1
4,154,656	-		Sama_3521	0.13	-0.0
4,154,656	-		Sama_3521	0.13	+0.1
4,154,692	+		Sama_3521	0.23	+0.6
4,154,707	+		Sama_3521	0.27	-1.4
4,154,708	-		Sama_3521	0.27	-0.7
4,154,708	-		Sama_3521	0.27	-0.3
4,154,756	+		Sama_3521	0.40	+0.1
4,154,756	+		Sama_3521	0.40	+0.3
4,154,756	+		Sama_3521	0.40	-1.0
4,154,756	+		Sama_3521	0.40	-0.1
4,154,756	+		Sama_3521	0.40	+0.3
4,154,756	+		Sama_3521	0.40	+0.7
4,154,756	+		Sama_3521	0.40	+0.7
4,154,756	+		Sama_3521	0.40	+1.4
4,154,756	+		Sama_3521	0.40	+0.4
4,154,756	+		Sama_3521	0.40	-0.2
4,154,756	+		Sama_3521	0.40	-0.1
4,154,756	+		Sama_3521	0.40	+0.7
4,154,756	+		Sama_3521	0.40	-0.1
4,154,756	+		Sama_3521	0.40	-0.6
4,154,756	+		Sama_3521	0.40	+1.4
4,154,756	+		Sama_3521	0.40	+0.8
4,154,756	+		Sama_3521	0.40	-0.2
4,154,756	+		Sama_3521	0.40	+1.9
4,154,757	-		Sama_3521	0.40	-0.9
4,154,757	-		Sama_3521	0.40	+0.6
4,154,757	-		Sama_3521	0.40	+1.0
4,154,757	-		Sama_3521	0.40	-1.3
4,154,757	-		Sama_3521	0.40	+1.4
4,154,757	-		Sama_3521	0.40	-0.5
4,154,757	-		Sama_3521	0.40	+0.4
4,154,757	-		Sama_3521	0.40	-0.2
4,154,757	-		Sama_3521	0.40	-0.2
4,154,757	-		Sama_3521	0.40	-0.7
4,154,757	-		Sama_3521	0.40	+0.5
4,154,757	-		Sama_3521	0.40	-0.1
4,154,757	-		Sama_3521	0.40	+0.3
4,154,757	-		Sama_3521	0.40	+0.5
4,154,763	+		Sama_3521	0.42	+0.2
4,154,763	+		Sama_3521	0.42	+0.3
4,154,764	-		Sama_3521	0.42	+0.5
4,154,764	-		Sama_3521	0.42	-0.6