Strain Fitness in Shewanella amazonensis SB2B around Sama_2975

Experiment: Cytidine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine
3,544,619	-		Sama_2973	0.87	-0.0
3,544,619	-		Sama_2973	0.87	+0.2
3,544,640	+		Sama_2973	0.88	+0.1
3,544,640	+		Sama_2973	0.88	+0.2
3,544,641	-		Sama_2973	0.88	-0.6
3,544,653	+		Sama_2973	0.89	+0.7
3,544,653	+		Sama_2973	0.89	+0.3
3,544,653	+		Sama_2973	0.89	-0.7
3,544,654	-		Sama_2973	0.89	-0.9
3,544,660	+		Sama_2973	0.89	+1.3
3,544,660	+		Sama_2973	0.89	+1.7
3,544,660	+		Sama_2973	0.89	+0.0
3,544,660	+		Sama_2973	0.89	-0.3
3,544,661	-		Sama_2973	0.89	-1.3
3,544,661	-		Sama_2973	0.89	+0.1
3,544,661	-		Sama_2973	0.89	+1.2
3,544,661	-		Sama_2973	0.89	+0.3
3,544,716	+				+0.6
3,544,716	+				-0.6
3,544,717	-				+0.2
3,544,720	+				+1.6
3,544,721	-				-0.8
3,544,721	-				-0.4
3,544,856	+				+0.6
3,544,886	+				+1.3
3,544,887	-				-0.8
3,544,887	-				-0.6
3,544,903	+				+0.5
3,544,903	+				+0.7
3,544,903	+				-0.0
3,544,903	+				-0.4
3,544,904	-				+1.4
3,544,904	-				-0.7
3,544,904	-				-1.5
3,544,904	-				-0.5
3,544,904	-				-0.3
3,544,904	-				+0.5
3,544,904	-				+1.4
3,544,904	-				+0.6
3,544,926	+				+0.6
3,544,927	-				-1.0
3,544,933	+				+1.7
3,544,953	+				-0.8
3,544,953	+				+0.7
3,544,953	+				-0.1
3,544,953	+				-0.4
3,544,953	+				-1.1
3,544,954	-				-1.6
3,544,954	-				+0.2
3,544,955	+				+0.7
3,544,955	+				-1.1
3,544,955	+				-1.1
3,544,955	+				-0.1
3,544,956	-				+0.3
3,544,956	-				-0.3
3,544,971	-				-0.1
3,544,978	+				+0.7
3,544,978	+				+0.6
3,544,989	-				+0.1
3,544,996	+				+0.4
3,544,997	-				-1.3
3,544,997	-				+0.5
3,544,997	-				-0.7
3,544,997	-				-0.6
3,544,997	-				-0.9
3,544,997	-				+0.5
3,545,016	+				+0.3
3,545,017	-				+0.4
3,545,017	-				-1.6
3,545,022	+				+2.3
3,545,062	+		Sama_2974	0.12	-1.3
3,545,062	+		Sama_2974	0.12	+0.7
3,545,062	+		Sama_2974	0.12	+0.2
3,545,062	+		Sama_2974	0.12	-0.8
3,545,062	+		Sama_2974	0.12	+0.4
3,545,063	-		Sama_2974	0.12	-0.1
3,545,063	-		Sama_2974	0.12	+0.8
3,545,063	-		Sama_2974	0.12	+0.4
3,545,063	-		Sama_2974	0.12	+1.3
3,545,063	-		Sama_2974	0.12	+0.2
3,545,063	-		Sama_2974	0.12	-1.6
3,545,063	-		Sama_2974	0.12	+0.1
3,545,063	-		Sama_2974	0.12	-0.7
3,545,063	-		Sama_2974	0.12	-0.1
3,545,063	-		Sama_2974	0.12	-0.2
3,545,063	-		Sama_2974	0.12	-0.4
3,545,119	+		Sama_2974	0.23	-0.1
3,545,120	-		Sama_2974	0.23	-1.2
3,545,250	+		Sama_2974	0.48	-1.1
3,545,250	+		Sama_2974	0.48	-0.0
3,545,251	-		Sama_2974	0.48	+0.2
3,545,297	+		Sama_2974	0.57	-0.1
3,545,357	-		Sama_2974	0.68	-0.4
3,545,365	+		Sama_2974	0.70	+1.0
3,545,427	+		Sama_2974	0.81	-0.6
3,545,447	-		Sama_2974	0.85	+0.2
3,545,554	+				-3.2
3,545,554	+				-0.8
3,545,554	+				-0.3
3,545,554	+				-1.1
3,545,554	+				+0.4
3,545,555	-				-0.5
3,545,555	-				-0.0
3,545,555	-				-0.3
3,545,555	-				-0.8
3,545,555	-				+0.4
3,545,558	+				+0.4
3,545,558	+				+1.0
3,545,558	+				+0.7
3,545,558	+				-1.1
3,545,559	-				+0.7
3,545,559	-				+0.5
3,545,559	-				-1.1
3,545,559	-				-1.6
3,545,559	-				-0.3
3,545,559	-				+0.4
3,545,559	-				-0.3
3,545,559	-				-0.8
3,545,559	-				-0.5
3,545,559	-				-1.6
3,545,576	+				-1.3
3,545,577	-				-0.7
3,545,596	+		Sama_2975	0.14	+1.0
3,545,597	-		Sama_2975	0.14	+2.2
3,545,636	-		Sama_2975	0.22	-0.8
3,545,681	+		Sama_2975	0.31	+1.7
3,545,857	+		Sama_2975	0.66	-1.8
3,545,858	-		Sama_2975	0.66	+0.3
3,545,858	-		Sama_2975	0.66	+1.6
3,545,858	-		Sama_2975	0.66	+1.2
3,545,858	-		Sama_2975	0.66	-0.6
3,545,858	-		Sama_2975	0.66	+0.6
3,545,928	-		Sama_2975	0.81	+0.8
3,545,928	-		Sama_2975	0.81	+0.7
3,545,935	+		Sama_2975	0.82	-1.1
3,545,935	+		Sama_2975	0.82	-0.5
3,545,936	-		Sama_2975	0.82	+0.4
3,545,973	+		Sama_2975	0.90	-0.6
3,545,973	+		Sama_2975	0.90	+0.1
3,545,974	-				-1.8
3,546,011	+				-0.5
3,546,053	-				+0.3
3,546,057	+				-0.5
3,546,057	+				+0.4
3,546,057	+				+0.7
3,546,057	+				-1.3
3,546,057	+				+2.1
3,546,057	+				+0.2
3,546,057	+				+0.4
3,546,057	+				-0.3
3,546,057	+				+0.5
3,546,057	+				-0.5
3,546,057	+				+0.2
3,546,057	+				+0.3
3,546,057	+				+0.2
3,546,057	+				-1.9
3,546,057	+				-1.3
3,546,057	+				+0.7
3,546,057	+				-0.5
3,546,057	+				-0.3
3,546,057	+				+0.6
3,546,057	+				+0.5
3,546,057	+				+0.1
3,546,057	+				-1.6
3,546,058	-				+0.5
3,546,058	-				+0.7
3,546,058	-				+0.2
3,546,058	-				+0.7
3,546,058	-				+0.0
3,546,058	-				-2.2
3,546,058	-				-0.1
3,546,058	-				-0.3
3,546,058	-				-1.2
3,546,058	-				+0.3
3,546,058	-				+0.5
3,546,058	-				-0.1
3,546,058	-				-1.1
3,546,058	-				-0.4
3,546,058	-				+0.9
3,546,058	-				+0.7
3,546,058	-				+1.1
3,546,058	-				-0.5
3,546,058	-				-0.3
3,546,126	+				+0.3
3,546,127	-				-1.3
3,546,132	+				-1.2
3,546,132	+				+0.6
3,546,132	+				+0.2
3,546,132	+				-0.3
3,546,132	+				+1.2
3,546,132	+				+0.4
3,546,132	+				+0.1
3,546,133	-				+1.0
3,546,133	-				-0.7
3,546,133	-				+0.5
3,546,133	-				+0.5
3,546,133	-				-0.2
3,546,133	-				+1.3
3,546,133	-				+0.0
3,546,133	-				+0.7
3,546,238	+				+0.0
3,546,238	+				+0.6
3,546,238	+				+0.3
3,546,239	-				-1.0
3,546,239	-				-0.0
3,546,239	-				+1.1
3,546,239	-				+1.3
3,546,239	-				-0.6
3,546,263	+		Sama_2976	0.10	-0.3
3,546,263	+		Sama_2976	0.10	-1.6
3,546,263	+		Sama_2976	0.10	+0.2
3,546,263	+		Sama_2976	0.10	+0.3
3,546,264	-		Sama_2976	0.10	+0.0
3,546,264	-		Sama_2976	0.10	+0.0
3,546,273	+		Sama_2976	0.11	+0.7
3,546,274	-		Sama_2976	0.11	+0.7
3,546,274	-		Sama_2976	0.11	-0.6
3,546,274	-		Sama_2976	0.11	-0.2
3,546,274	-		Sama_2976	0.11	+0.3
3,546,274	-		Sama_2976	0.11	-0.7
3,546,277	+		Sama_2976	0.11	+0.0
3,546,277	+		Sama_2976	0.11	-0.4
3,546,286	+		Sama_2976	0.12	+1.7
3,546,297	-		Sama_2976	0.13	+0.1
3,546,313	+		Sama_2976	0.14	+1.0
3,546,314	-		Sama_2976	0.14	-0.9
3,546,356	+		Sama_2976	0.18	-0.1
3,546,356	+		Sama_2976	0.18	-0.0
3,546,356	+		Sama_2976	0.18	+0.5
3,546,357	-		Sama_2976	0.18	+1.9
3,546,357	-		Sama_2976	0.18	+0.1
3,546,409	+		Sama_2976	0.22	+1.7
3,546,409	+		Sama_2976	0.22	+0.4
3,546,409	+		Sama_2976	0.22	+0.2
3,546,410	-		Sama_2976	0.22	+0.6
3,546,410	-		Sama_2976	0.22	-0.2
3,546,410	-		Sama_2976	0.22	+0.0
3,546,410	-		Sama_2976	0.22	-0.2
3,546,410	-		Sama_2976	0.22	-0.9
3,546,492	-		Sama_2976	0.29	-0.2
3,546,492	-		Sama_2976	0.29	-0.1
3,546,512	+		Sama_2976	0.31	-0.0
3,546,513	-		Sama_2976	0.31	+0.2
3,546,530	+		Sama_2976	0.32	+0.1
3,546,530	+		Sama_2976	0.32	-1.4
3,546,530	+		Sama_2976	0.32	-0.2
3,546,531	-		Sama_2976	0.32	+0.3
3,546,531	-		Sama_2976	0.32	-0.5
3,546,587	+		Sama_2976	0.37	-0.3
3,546,587	+		Sama_2976	0.37	+1.2
3,546,587	+		Sama_2976	0.37	-0.6
3,546,588	-		Sama_2976	0.37	+0.0
3,546,610	-		Sama_2976	0.39	-2.3
3,546,614	+		Sama_2976	0.39	-0.4
3,546,614	+		Sama_2976	0.39	-1.6
3,546,614	+		Sama_2976	0.39	+0.0
3,546,614	+		Sama_2976	0.39	-0.6
3,546,614	+		Sama_2976	0.39	+0.5
3,546,615	-		Sama_2976	0.39	-0.8
3,546,615	-		Sama_2976	0.39	+1.0
3,546,615	-		Sama_2976	0.39	-0.7
3,546,622	+		Sama_2976	0.40	+1.6
3,546,622	+		Sama_2976	0.40	-0.8
3,546,622	+		Sama_2976	0.40	+0.4
3,546,622	+		Sama_2976	0.40	+0.6
3,546,622	+		Sama_2976	0.40	+0.7
3,546,623	-		Sama_2976	0.40	-0.3
3,546,623	-		Sama_2976	0.40	+0.4
3,546,623	-		Sama_2976	0.40	-1.6
3,546,623	-		Sama_2976	0.40	-0.8
3,546,623	-		Sama_2976	0.40	+0.1
3,546,623	-		Sama_2976	0.40	+1.1
3,546,623	-		Sama_2976	0.40	+1.3
3,546,665	+		Sama_2976	0.43	-1.9
3,546,671	+		Sama_2976	0.44	+1.5
3,546,671	+		Sama_2976	0.44	-0.8
3,546,671	+		Sama_2976	0.44	+0.0
3,546,672	-		Sama_2976	0.44	+0.3
3,546,672	-		Sama_2976	0.44	-0.4
3,546,672	-		Sama_2976	0.44	+0.7
3,546,672	-		Sama_2976	0.44	-0.9
3,546,689	+		Sama_2976	0.45	-0.5
3,546,690	-		Sama_2976	0.45	-1.1
3,546,710	-		Sama_2976	0.47	-1.1
3,546,713	+		Sama_2976	0.47	-0.7
3,546,714	-		Sama_2976	0.47	+0.6
3,546,714	-		Sama_2976	0.47	-0.7
3,546,714	-		Sama_2976	0.47	+0.6
3,546,724	-		Sama_2976	0.48	-0.1
3,546,809	+		Sama_2976	0.55	-0.1
3,546,810	-		Sama_2976	0.55	+0.5
3,546,810	-		Sama_2976	0.55	-1.4
3,546,823	+		Sama_2976	0.56	-0.5
3,546,823	+		Sama_2976	0.56	+1.2
3,546,824	-		Sama_2976	0.56	-1.3
3,546,824	-		Sama_2976	0.56	-0.6
3,546,824	-		Sama_2976	0.56	+0.3
3,546,828	+		Sama_2976	0.57	-0.3
3,546,828	+		Sama_2976	0.57	-0.5
3,546,828	+		Sama_2976	0.57	-1.2
3,546,828	+		Sama_2976	0.57	+0.4
3,546,829	-		Sama_2976	0.57	+0.2
3,546,829	-		Sama_2976	0.57	-0.8
3,546,859	+		Sama_2976	0.59	+0.7
3,546,859	+		Sama_2976	0.59	-0.5
3,546,859	+		Sama_2976	0.59	-1.1
3,546,922	+		Sama_2976	0.64	+1.1
3,546,922	+		Sama_2976	0.64	+0.6
3,546,922	+		Sama_2976	0.64	-0.7
3,546,922	+		Sama_2976	0.64	-1.8
3,546,922	+		Sama_2976	0.64	-0.6
3,546,922	+		Sama_2976	0.64	+0.6
3,546,923	-		Sama_2976	0.64	-0.3
3,546,923	-		Sama_2976	0.64	+0.9
3,546,923	-		Sama_2976	0.64	-0.1
3,546,923	-		Sama_2976	0.64	-0.5