Strain Fitness in Shewanella amazonensis SB2B around Sama_0049

Experiment: Cytidine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine
50,973	+				-1.3
50,973	+				-0.1
50,974	-				-0.8
50,974	-				+0.6
50,974	-				-0.6
50,974	-				-0.9
50,974	-				+0.1
51,009	-				-0.3
51,027	+				-0.7
51,027	+				+1.3
51,027	+				-0.4
51,028	-				-0.2
51,028	-				+1.6
51,028	-				+0.4
51,028	-				+0.4
51,028	-				+0.3
51,047	+				+1.4
51,047	+				-0.2
51,047	+				+1.1
51,047	+				-0.3
51,047	+				-0.4
51,048	-				-0.6
51,048	-				-0.6
51,054	-				-0.4
51,063	-				-0.5
51,066	+				+0.5
51,067	+				-1.0
51,067	+				-0.0
51,067	+				-0.2
51,067	+				+0.1
51,067	+				-0.6
51,067	+				-1.5
51,067	+				+0.5
51,067	+				-0.6
51,067	+				+0.6
51,067	+				+0.7
51,067	+				-0.1
51,067	+				+0.5
51,067	+				+0.5
51,067	+				+0.6
51,067	+				+0.7
51,067	+				+0.1
51,068	-				-1.1
51,068	-				-0.7
51,068	-				-1.2
51,068	-				-0.4
51,068	-				-0.6
51,068	-				+0.4
51,068	-				+0.1
51,068	-				+0.3
51,068	-				-1.8
51,068	-				-2.5
51,068	-				-2.0
51,068	-				-0.1
51,068	-				-1.5
51,068	-				-0.2
51,068	-				-0.6
51,068	-				-1.2
51,068	-				-0.4
51,068	-				-1.7
51,068	-				+0.6
51,068	-				-0.5
51,069	+				+0.9
51,069	+				+0.8
51,069	+				-0.1
51,069	+				+1.3
51,069	+				+0.2
51,069	+				+0.2
51,069	+				-0.2
51,069	+				+1.5
51,069	+				-0.2
51,069	+				-0.0
51,069	+				-1.2
51,069	+				+0.5
51,069	+				+1.0
51,070	-				-0.0
51,070	-				-1.3
51,070	-				-0.6
51,070	-				-0.1
51,070	-				-0.1
51,070	-				+0.1
51,070	-				+1.8
51,111	+				+1.1
51,111	+				-0.2
51,112	-				-0.6
51,112	-				-0.1
51,127	+				-0.0
51,127	+				+1.1
51,127	+				-1.2
51,128	-				-0.1
51,128	-				+0.2
51,128	-				+0.0
51,128	-				-0.3
51,138	+				+0.1
51,139	-				-1.2
51,139	-				+0.0
51,149	+				+0.1
51,149	+				-0.5
51,149	+				-0.6
51,149	+				-0.3
51,149	+				-0.2
51,150	-				+0.6
51,150	-				-0.3
51,150	-				+0.1
51,166	+				-0.8
51,166	+				+0.1
51,166	+				-1.4
51,167	-				+0.2
51,167	-				+0.1
51,167	-				-0.6
51,167	-				+0.9
51,171	+				-1.4
51,172	-				+0.7
51,172	-				+0.6
51,172	-				+1.1
51,188	+				+0.6
51,189	-				+1.5
51,189	-				+0.3
51,218	+				+1.4
51,218	+				+0.4
51,219	-				+0.5
51,248	+				+0.7
51,249	-				-0.6
51,249	-				+2.0
51,249	-				-1.9
51,249	-				-2.2
51,249	-				-1.8
51,258	+				-0.7
51,258	+				-0.0
51,259	-				-1.1
51,263	+				+1.3
51,263	+				+0.8
51,279	-				-2.1
51,280	-				+0.1
51,280	-				-1.2
51,280	-				-0.2
51,300	+				-0.6
51,300	+				-0.2
51,300	+				-0.7
51,300	+				+1.4
51,301	-				+1.0
51,301	-				-0.4
51,440	+		Sama_0048	0.27	-1.0
51,440	+		Sama_0048	0.27	-0.8
51,440	+		Sama_0048	0.27	-0.4
51,440	+		Sama_0048	0.27	+0.3
51,441	-		Sama_0048	0.27	+1.0
51,441	-		Sama_0048	0.27	-0.7
51,441	-		Sama_0048	0.27	-1.0
51,456	+		Sama_0048	0.29	-0.2
51,457	-		Sama_0048	0.30	+0.1
51,457	-		Sama_0048	0.30	-0.6
51,529	+		Sama_0048	0.42	+0.2
51,562	+		Sama_0048	0.48	+0.5
51,562	+		Sama_0048	0.48	+1.0
51,562	+		Sama_0048	0.48	+0.6
51,562	+		Sama_0048	0.48	+1.4
51,562	+		Sama_0048	0.48	-2.0
51,563	-		Sama_0048	0.48	-0.0
51,563	-		Sama_0048	0.48	-0.1
51,563	-		Sama_0048	0.48	+0.2
51,563	-		Sama_0048	0.48	+0.5
51,563	-		Sama_0048	0.48	+0.2
51,563	-		Sama_0048	0.48	+1.0
51,680	-		Sama_0048	0.69	-0.7
51,680	-		Sama_0048	0.69	+0.0
51,689	+		Sama_0048	0.71	+0.2
51,731	+		Sama_0048	0.78	+0.3
51,731	+		Sama_0048	0.78	+0.1
51,732	-		Sama_0048	0.78	-2.2
51,732	-		Sama_0048	0.78	+0.0
51,732	-		Sama_0048	0.78	-0.1
51,732	-		Sama_0048	0.78	-0.3
51,787	+		Sama_0048	0.88	-0.6
51,787	+		Sama_0048	0.88	-0.0
51,802	+				+0.5
51,824	-				-0.6
51,824	-				-0.2
51,836	+				+1.3
51,836	+				+0.6
51,836	+				-0.2
51,837	-				+0.1
51,837	-				+1.1
51,837	-				+0.5
51,837	-				-0.8
51,892	+				-0.6
51,892	+				-1.3
51,893	-				-0.8
51,893	-				-0.8
51,893	-				+0.3
51,894	+				+0.6
51,894	+				+0.2
51,894	+				-0.2
51,894	+				-1.6
51,894	+				-0.0
51,895	-				+0.4
51,895	-				-0.8
51,895	-				-1.1
51,895	-				-0.6
51,895	-				+0.4
51,958	+				-0.8
51,958	+				-0.2
51,958	+				+0.5
51,959	-				+0.4
51,959	-				-1.5
51,959	-				+0.6
51,959	-				+1.3
51,959	-				+0.6
51,959	-				-0.9
51,970	+				-0.7
51,970	+				+0.5
51,970	+				-0.2
51,970	+				-0.1
51,970	+				-0.0
51,970	+				+0.6
51,971	-				+0.3
51,971	-				-0.0
51,971	-				-0.9
52,036	+		Sama_0049	0.15	-0.0
52,036	+		Sama_0049	0.15	-1.6
52,036	+		Sama_0049	0.15	+0.8
52,036	+		Sama_0049	0.15	-0.8
52,036	+		Sama_0049	0.15	-1.3
52,036	+		Sama_0049	0.15	+2.2
52,036	+		Sama_0049	0.15	+0.3
52,036	+		Sama_0049	0.15	-0.1
52,036	+		Sama_0049	0.15	-0.3
52,036	+		Sama_0049	0.15	-1.1
52,036	+		Sama_0049	0.15	-0.6
52,036	+		Sama_0049	0.15	+0.8
52,036	+		Sama_0049	0.15	-0.5
52,036	+		Sama_0049	0.15	-1.2
52,036	+		Sama_0049	0.15	+0.9
52,036	+		Sama_0049	0.15	-0.2
52,036	+		Sama_0049	0.15	+0.1
52,037	-		Sama_0049	0.15	+1.5
52,037	-		Sama_0049	0.15	-0.4
52,037	-		Sama_0049	0.15	-0.2
52,037	-		Sama_0049	0.15	-0.5
52,037	-		Sama_0049	0.15	+0.2
52,037	-		Sama_0049	0.15	-1.1
52,037	-		Sama_0049	0.15	+1.6
52,037	-		Sama_0049	0.15	-0.6
52,037	-		Sama_0049	0.15	-0.0
52,038	+		Sama_0049	0.15	-0.9
52,038	+		Sama_0049	0.15	+4.6
52,038	+		Sama_0049	0.15	-0.4
52,038	+		Sama_0049	0.15	-0.0
52,039	-		Sama_0049	0.15	-1.6
52,039	-		Sama_0049	0.15	-1.3
52,039	-		Sama_0049	0.15	-0.2
52,039	-		Sama_0049	0.15	-0.9
52,073	+		Sama_0049	0.21	+1.4
52,075	+		Sama_0049	0.22	-0.0
52,075	+		Sama_0049	0.22	-0.7
52,075	+		Sama_0049	0.22	-0.7
52,075	+		Sama_0049	0.22	-1.0
52,075	+		Sama_0049	0.22	-0.3
52,076	-		Sama_0049	0.22	+0.2
52,076	-		Sama_0049	0.22	-0.2
52,076	-		Sama_0049	0.22	-0.9
52,076	-		Sama_0049	0.22	-0.4
52,076	-		Sama_0049	0.22	+0.5
52,093	+		Sama_0049	0.25	+0.4
52,094	-		Sama_0049	0.25	+1.9
52,094	-		Sama_0049	0.25	+1.4
52,094	-		Sama_0049	0.25	-1.4
52,120	+		Sama_0049	0.29	+0.5
52,120	+		Sama_0049	0.29	-0.8
52,120	+		Sama_0049	0.29	+0.2
52,121	-		Sama_0049	0.30	-0.2
52,121	-		Sama_0049	0.30	-0.2
52,121	-		Sama_0049	0.30	-0.9
52,121	-		Sama_0049	0.30	+1.3
52,158	+		Sama_0049	0.36	+0.1
52,158	+		Sama_0049	0.36	-0.0
52,158	+		Sama_0049	0.36	+0.3
52,158	+		Sama_0049	0.36	+0.3
52,159	-		Sama_0049	0.36	-1.2
52,159	-		Sama_0049	0.36	+0.5
52,159	-		Sama_0049	0.36	+1.2
52,159	-		Sama_0049	0.36	+0.5
52,159	-		Sama_0049	0.36	-0.7
52,159	-		Sama_0049	0.36	+0.4
52,159	-		Sama_0049	0.36	+0.6
52,159	-		Sama_0049	0.36	-1.0
52,159	-		Sama_0049	0.36	-1.2
52,159	-		Sama_0049	0.36	-1.3
52,160	+		Sama_0049	0.36	+0.8
52,160	+		Sama_0049	0.36	-0.3
52,160	+		Sama_0049	0.36	-0.3
52,160	+		Sama_0049	0.36	-0.8
52,161	-		Sama_0049	0.37	+0.6
52,161	-		Sama_0049	0.37	+0.2
52,161	-		Sama_0049	0.37	-0.6
52,161	-		Sama_0049	0.37	-0.4
52,161	-		Sama_0049	0.37	-0.3
52,161	-		Sama_0049	0.37	-1.5
52,168	+		Sama_0049	0.38	-1.0
52,169	-		Sama_0049	0.38	-0.1
52,169	-		Sama_0049	0.38	-0.6
52,169	-		Sama_0049	0.38	-0.5
52,169	-		Sama_0049	0.38	+1.1
52,192	+		Sama_0049	0.42	-0.8
52,192	+		Sama_0049	0.42	-0.0
52,192	+		Sama_0049	0.42	-0.8
52,192	+		Sama_0049	0.42	-0.2
52,193	-		Sama_0049	0.42	-0.5
52,193	-		Sama_0049	0.42	-1.0
52,193	-		Sama_0049	0.42	+0.3
52,226	+		Sama_0049	0.48	-0.3
52,226	+		Sama_0049	0.48	+1.4
52,226	+		Sama_0049	0.48	+0.1
52,227	-		Sama_0049	0.48	-1.0
52,227	-		Sama_0049	0.48	+0.7
52,227	-		Sama_0049	0.48	+0.6
52,255	+		Sama_0049	0.53	+0.3
52,255	+		Sama_0049	0.53	-1.3
52,255	+		Sama_0049	0.53	-1.1
52,255	+		Sama_0049	0.53	+1.7
52,255	+		Sama_0049	0.53	-0.8
52,255	+		Sama_0049	0.53	+0.7
52,255	+		Sama_0049	0.53	+0.1
52,255	+		Sama_0049	0.53	+0.3
52,255	+		Sama_0049	0.53	-0.5
52,255	+		Sama_0049	0.53	+0.5
52,255	+		Sama_0049	0.53	-0.6
52,256	-		Sama_0049	0.53	-0.4
52,256	-		Sama_0049	0.53	-0.6
52,256	-		Sama_0049	0.53	-0.3
52,256	-		Sama_0049	0.53	-0.4
52,256	-		Sama_0049	0.53	+0.3
52,262	+		Sama_0049	0.54	-1.0
52,262	+		Sama_0049	0.54	-0.2
52,263	-		Sama_0049	0.54	+1.0
52,284	-		Sama_0049	0.58	-0.0
52,295	+		Sama_0049	0.60	+0.2
52,296	-		Sama_0049	0.60	-0.8
52,318	+		Sama_0049	0.64	-0.9
52,318	+		Sama_0049	0.64	-0.8
52,318	+		Sama_0049	0.64	-0.4
52,318	+		Sama_0049	0.64	+0.3
52,318	+		Sama_0049	0.64	-4.3
52,319	-		Sama_0049	0.64	+0.5
52,319	-		Sama_0049	0.64	-2.6
52,319	-		Sama_0049	0.64	+0.3
52,319	-		Sama_0049	0.64	+0.2
52,332	+		Sama_0049	0.66	+0.2
52,332	+		Sama_0049	0.66	+0.8
52,332	+		Sama_0049	0.66	-0.7
52,333	-		Sama_0049	0.67	-0.0
52,333	-		Sama_0049	0.67	-0.2
52,333	-		Sama_0049	0.67	-1.7
52,333	-		Sama_0049	0.67	+0.1
52,333	-		Sama_0049	0.67	+0.9
52,333	-		Sama_0049	0.67	-0.7
52,333	-		Sama_0049	0.67	+1.6
52,354	+		Sama_0049	0.70	-0.8
52,354	+		Sama_0049	0.70	+0.1
52,427	+		Sama_0049	0.83	-0.5
52,485	-				+0.3
52,505	+				+0.2
52,505	+				-0.2
52,505	+				+0.8
52,506	-				-2.2
52,506	-				+0.8
52,521	+				+0.8
52,521	+				+0.9
52,521	+				+0.2
52,521	+				-0.1
52,521	+				+0.4
52,562	+				-0.2
52,575	-				-0.5
52,590	+				-0.8
52,704	-		Sama_0050	0.18	-0.3
52,843	+		Sama_0050	0.33	+0.4
52,843	+		Sama_0050	0.33	+0.6
52,843	+		Sama_0050	0.33	-0.3
52,843	+		Sama_0050	0.33	+0.4
52,843	+		Sama_0050	0.33	-1.1
52,844	-		Sama_0050	0.34	+0.5
52,844	-		Sama_0050	0.34	-0.9
52,844	-		Sama_0050	0.34	-0.1
52,844	-		Sama_0050	0.34	-1.0
52,845	+		Sama_0050	0.34	-0.5
52,845	+		Sama_0050	0.34	-1.0
52,846	-		Sama_0050	0.34	+0.3
52,846	-		Sama_0050	0.34	+0.1
52,846	-		Sama_0050	0.34	+0.3
52,879	-		Sama_0050	0.37	+0.3
52,942	+		Sama_0050	0.44	+0.8
52,942	+		Sama_0050	0.44	+0.8
52,943	-		Sama_0050	0.44	+0.9
52,946	-		Sama_0050	0.45	+0.8
52,966	-		Sama_0050	0.47	+0.4
53,029	+		Sama_0050	0.54	+1.0
53,030	-		Sama_0050	0.54	-0.7
53,050	+		Sama_0050	0.56	-1.3
53,050	+		Sama_0050	0.56	-0.0
53,050	+		Sama_0050	0.56	+0.7
53,130	+		Sama_0050	0.65	-0.0
53,131	-		Sama_0050	0.65	+0.2
53,143	+		Sama_0050	0.66	+1.3
53,143	+		Sama_0050	0.66	+0.1
53,144	-		Sama_0050	0.66	-0.6
53,144	-		Sama_0050	0.66	-0.8
53,144	-		Sama_0050	0.66	+0.1
53,144	-		Sama_0050	0.66	-1.3
53,145	+		Sama_0050	0.66	+0.2
53,145	+		Sama_0050	0.66	-0.3
53,145	+		Sama_0050	0.66	+1.0
53,145	+		Sama_0050	0.66	-0.8
53,146	-		Sama_0050	0.67	-0.3
53,146	-		Sama_0050	0.67	+0.4
53,146	-		Sama_0050	0.67	-1.3
53,146	-		Sama_0050	0.67	+0.4
53,146	-		Sama_0050	0.67	+0.4
53,179	+		Sama_0050	0.70	-0.4
53,179	+		Sama_0050	0.70	-1.0
53,179	+		Sama_0050	0.70	-0.7
53,179	+		Sama_0050	0.70	+0.6
53,180	-		Sama_0050	0.70	+0.7
53,180	-		Sama_0050	0.70	-0.3
53,180	-		Sama_0050	0.70	-2.2
53,180	-		Sama_0050	0.70	+0.1
53,188	-		Sama_0050	0.71	-2.5
53,188	-		Sama_0050	0.71	-0.9
53,203	-		Sama_0050	0.73	+0.4
53,203	-		Sama_0050	0.73	+1.6
53,245	+		Sama_0050	0.77	-1.6
53,261	-		Sama_0050	0.79	-0.6
53,261	-		Sama_0050	0.79	+2.0
53,281	+		Sama_0050	0.81	+1.1
53,281	+		Sama_0050	0.81	-0.7
53,281	+		Sama_0050	0.81	+1.3
53,368	+				-0.0
53,369	-				-1.3
53,369	-				-0.3
53,374	+				-0.0
53,374	+				+0.6
53,376	+				-0.7
53,377	-				+0.4
53,377	-				+0.8
53,410	+				-0.2
53,410	+				-0.4
53,411	-				+0.1
53,411	-				+0.3
53,411	-				-0.3
53,450	-				-1.8
53,467	+				+1.0
53,467	+				-1.0
53,467	+				-0.4
53,467	+				-0.0
53,467	+				+0.4
53,467	+				+0.3
53,467	+				-0.1
53,467	+				-0.7
53,467	+				+0.6
53,467	+				+2.0
53,468	-				-0.1
53,468	-				+0.3
53,468	-				-0.6
53,468	-				+0.7
53,468	-				-1.0
53,468	-				+0.7
53,468	-				-0.4
53,468	-				-0.9
53,468	-				+0.5
53,468	-				-0.0
53,468	-				+1.0
53,470	+				+1.0
53,471	-				-0.2
53,478	+				-0.7
53,479	-				-0.0
53,479	-				+0.8
53,479	-				+0.2
53,485	+				+0.2
53,512	+				-0.0
53,512	+				-1.0
53,512	+				-1.2
53,513	-				-0.8
53,513	-				-0.3
53,513	-				-0.9
53,520	+				+0.6
53,520	+				+0.9
53,520	+				+0.6
53,520	+				+0.4
53,520	+				+1.0
53,520	+				-0.2
53,521	-		Sama_0051	0.10	-0.3
53,521	-		Sama_0051	0.10	-0.0
53,521	-		Sama_0051	0.10	-0.6