Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_2824 and SO2827 are separated by 420 nucleotides SO2827 and SO2828 are separated by 2 nucleotides SO2828 and SO2829 are separated by 22 nucleotides SO2829 and SO2830 are separated by 68 nucleotides
SO_2824: SO_2824 - no description, at 2,946,237 to 2,946,491
_2824
SO2827: SO2827 - conserved hypothetical protein (NCBI ptt file), at 2,946,912 to 2,947,283
SO2827
SO2828: SO2828 - hypothetical protein (NCBI ptt file), at 2,947,286 to 2,947,474
SO2828
SO2829: SO2829 - conserved domain protein (NCBI ptt file), at 2,947,497 to 2,947,946
SO2829
SO2830: SO2830 - hypothetical protein (NCBI ptt file), at 2,948,015 to 2,948,953
SO2830
Position (kb)
2947
2948 Strain fitness (log2 ratio)
-2
-1
0
1 at 2946.294 kb on - strand, within SO_2824 at 2946.363 kb on + strand, within SO_2824 at 2946.513 kb on - strand at 2946.850 kb on + strand at 2946.858 kb on - strand at 2946.858 kb on - strand at 2946.928 kb on + strand at 2946.988 kb on + strand, within SO2827 at 2947.236 kb on + strand, within SO2827 at 2947.258 kb on - strand at 2947.334 kb on - strand, within SO2828 at 2947.482 kb on + strand at 2947.502 kb on - strand at 2947.618 kb on - strand, within SO2829 at 2947.671 kb on - strand, within SO2829 at 2948.000 kb on + strand at 2948.008 kb on - strand at 2948.094 kb on - strand at 2948.266 kb on - strand, within SO2830 at 2948.365 kb on + strand, within SO2830 at 2948.375 kb on + strand, within SO2830 at 2948.375 kb on + strand, within SO2830
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 2,946,294 - SO_2824 0.22 -0.2 2,946,363 + SO_2824 0.49 -0.3 2,946,513 - -1.5 2,946,850 + -1.1 2,946,858 - +0.3 2,946,858 - +1.0 2,946,928 + +0.2 2,946,988 + SO2827 0.20 +0.3 2,947,236 + SO2827 0.87 -0.5 2,947,258 - -0.4 2,947,334 - SO2828 0.25 +0.6 2,947,482 + -0.2 2,947,502 - +1.1 2,947,618 - SO2829 0.27 +1.4 2,947,671 - SO2829 0.39 -0.1 2,948,000 + -0.7 2,948,008 - -0.7 2,948,094 - +0.3 2,948,266 - SO2830 0.27 +0.1 2,948,365 + SO2830 0.37 -1.8 2,948,375 + SO2830 0.38 +0.5 2,948,375 + SO2830 0.38 -0.2
Or see this region's nucleotide sequence