Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2432 and aspS are separated by 216 nucleotides aspS and SO2434 are separated by 184 nucleotides
SO2432: SO2432 - conserved hypothetical protein TIGR01033 (NCBI ptt file), at 2,540,600 to 2,541,346
SO2432
SO2433: aspS - aspartyl-tRNA synthetase (NCBI ptt file), at 2,541,563 to 2,543,338
aspS
SO2434: SO2434 - extracellular solute-binding proteins, family 3/GGDEF domain protein (NCBI ptt file), at 2,543,523 to 2,546,336
SO2434
Position (kb)
2541
2542
2543
2544 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2540.570 kb on - strand at 2540.855 kb on - strand, within SO2432 at 2540.924 kb on + strand, within SO2432 at 2540.980 kb on - strand, within SO2432 at 2541.074 kb on + strand, within SO2432 at 2541.311 kb on - strand at 2541.356 kb on + strand at 2541.362 kb on - strand at 2541.364 kb on - strand at 2541.364 kb on - strand at 2541.364 kb on - strand at 2541.390 kb on + strand at 2541.441 kb on + strand at 2541.441 kb on + strand at 2541.592 kb on + strand at 2543.472 kb on - strand at 2543.480 kb on - strand at 2543.562 kb on - strand at 2543.672 kb on - strand at 2543.673 kb on + strand at 2543.694 kb on + strand at 2543.751 kb on - strand at 2543.864 kb on - strand, within SO2434 at 2543.973 kb on + strand, within SO2434 at 2543.991 kb on + strand, within SO2434 at 2544.178 kb on - strand, within SO2434 at 2544.188 kb on - strand, within SO2434
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 2,540,570 - -0.6 2,540,855 - SO2432 0.34 -0.6 2,540,924 + SO2432 0.43 -2.2 2,540,980 - SO2432 0.51 -0.0 2,541,074 + SO2432 0.63 -1.9 2,541,311 - -0.1 2,541,356 + -2.1 2,541,362 - +0.2 2,541,364 - -0.3 2,541,364 - +0.0 2,541,364 - -1.0 2,541,390 + -1.9 2,541,441 + -0.6 2,541,441 + -2.5 2,541,592 + -3.2 2,543,472 - +0.1 2,543,480 - -1.0 2,543,562 - +0.0 2,543,672 - +0.3 2,543,673 + -0.4 2,543,694 + +0.6 2,543,751 - +0.9 2,543,864 - SO2434 0.12 -0.2 2,543,973 + SO2434 0.16 -0.6 2,543,991 + SO2434 0.17 -0.6 2,544,178 - SO2434 0.23 +0.1 2,544,188 - SO2434 0.24 -0.0
Or see this region's nucleotide sequence