Strain Fitness in Shewanella oneidensis MR-1 around SO0744

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0743 and SO0744 are separated by 133 nucleotidesSO0744 and SO0745 are separated by 215 nucleotidesSO0745 and SO0746 are separated by 6 nucleotides SO0743: SO0743 - iron(III) ABC transporter, permease protein (NCBI ptt file), at 760,518 to 762,152 SO0743 SO0744: SO0744 - iron(III) ABC transporter, periplasmic iron(III)-binding protein (NCBI ptt file), at 762,286 to 763,293 SO0744 SO0745: SO0745 - hypothetical protein (NCBI ptt file), at 763,509 to 763,928 SO0745 SO0746: SO0746 - glutathione S-transferase family protein (NCBI ptt file), at 763,935 to 764,531 SO0746 Position (kb) 762 763 764Strain fitness (log2 ratio) -1 0 1at 761.291 kb on + strand, within SO0743at 761.291 kb on + strand, within SO0743at 761.310 kb on - strand, within SO0743at 761.383 kb on + strand, within SO0743at 761.419 kb on + strand, within SO0743at 761.419 kb on + strand, within SO0743at 761.419 kb on + strand, within SO0743at 761.427 kb on - strand, within SO0743at 761.472 kb on - strand, within SO0743at 761.481 kb on + strand, within SO0743at 761.559 kb on + strand, within SO0743at 761.645 kb on + strand, within SO0743at 761.729 kb on + strand, within SO0743at 761.737 kb on - strand, within SO0743at 761.739 kb on - strand, within SO0743at 761.772 kb on + strand, within SO0743at 761.778 kb on + strand, within SO0743at 761.799 kb on + strand, within SO0743at 761.799 kb on + strand, within SO0743at 761.799 kb on + strand, within SO0743at 761.807 kb on - strand, within SO0743at 761.807 kb on - strand, within SO0743at 761.807 kb on - strand, within SO0743at 761.807 kb on - strand, within SO0743at 761.828 kb on + strand, within SO0743at 761.874 kb on - strand, within SO0743at 761.943 kb on - strand, within SO0743at 761.984 kb on + strand, within SO0743at 761.992 kb on - strandat 761.992 kb on - strandat 762.042 kb on + strandat 762.084 kb on + strandat 762.084 kb on + strandat 762.084 kb on + strandat 762.092 kb on - strandat 762.092 kb on - strandat 762.103 kb on + strandat 762.137 kb on - strandat 762.160 kb on + strandat 762.220 kb on - strandat 762.227 kb on + strandat 762.251 kb on - strandat 762.295 kb on + strandat 762.368 kb on + strandat 762.368 kb on + strandat 762.368 kb on + strandat 762.386 kb on - strandat 762.405 kb on - strand, within SO0744at 762.639 kb on + strand, within SO0744at 762.649 kb on - strand, within SO0744at 762.686 kb on + strand, within SO0744at 762.694 kb on - strand, within SO0744at 762.755 kb on + strand, within SO0744at 762.763 kb on - strand, within SO0744at 762.763 kb on - strand, within SO0744at 762.775 kb on - strand, within SO0744at 762.819 kb on + strand, within SO0744at 762.985 kb on - strand, within SO0744at 763.015 kb on + strand, within SO0744at 763.179 kb on - strand, within SO0744at 763.272 kb on - strandat 763.319 kb on + strandat 763.343 kb on - strandat 763.384 kb on - strandat 763.406 kb on - strandat 763.531 kb on + strandat 763.545 kb on - strandat 763.626 kb on + strand, within SO0745at 763.634 kb on - strand, within SO0745at 763.634 kb on - strand, within SO0745at 763.636 kb on - strand, within SO0745at 763.649 kb on - strand, within SO0745at 763.698 kb on + strand, within SO0745at 763.781 kb on - strand, within SO0745at 763.811 kb on + strand, within SO0745at 763.811 kb on + strand, within SO0745at 763.898 kb on + strandat 763.906 kb on - strandat 763.932 kb on + strandat 763.940 kb on - strandat 763.979 kb on + strandat 764.067 kb on + strand, within SO0746at 764.075 kb on - strand, within SO0746at 764.236 kb on - strand, within SO0746at 764.271 kb on + strand, within SO0746at 764.271 kb on + strand, within SO0746at 764.271 kb on + strand, within SO0746at 764.271 kb on + strand, within SO0746at 764.271 kb on + strand, within SO0746at 764.271 kb on + strand, within SO0746at 764.279 kb on - strand, within SO0746at 764.279 kb on - strand, within SO0746at 764.279 kb on - strand, within SO0746at 764.279 kb on - strand, within SO0746

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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761,291 + SO0743 0.47 -0.4
761,291 + SO0743 0.47 +0.2
761,310 - SO0743 0.48 -0.5
761,383 + SO0743 0.53 +0.1
761,419 + SO0743 0.55 -0.9
761,419 + SO0743 0.55 +0.4
761,419 + SO0743 0.55 +0.5
761,427 - SO0743 0.56 -0.1
761,472 - SO0743 0.58 +0.1
761,481 + SO0743 0.59 -0.3
761,559 + SO0743 0.64 +0.1
761,645 + SO0743 0.69 -0.1
761,729 + SO0743 0.74 +0.6
761,737 - SO0743 0.75 +0.2
761,739 - SO0743 0.75 -0.5
761,772 + SO0743 0.77 +0.4
761,778 + SO0743 0.77 +0.3
761,799 + SO0743 0.78 +0.3
761,799 + SO0743 0.78 -0.0
761,799 + SO0743 0.78 +0.7
761,807 - SO0743 0.79 +0.3
761,807 - SO0743 0.79 +0.3
761,807 - SO0743 0.79 -0.2
761,807 - SO0743 0.79 +0.1
761,828 + SO0743 0.80 +0.4
761,874 - SO0743 0.83 -0.4
761,943 - SO0743 0.87 +0.3
761,984 + SO0743 0.90 -0.2
761,992 - +0.1
761,992 - -0.6
762,042 + +0.1
762,084 + -0.5
762,084 + -0.6
762,084 + +1.1
762,092 - -0.9
762,092 - -0.2
762,103 + +0.3
762,137 - +0.2
762,160 + -0.2
762,220 - -0.6
762,227 + +1.2
762,251 - -0.4
762,295 + -0.3
762,368 + +0.3
762,368 + +0.7
762,368 + +0.1
762,386 - +0.2
762,405 - SO0744 0.12 +0.8
762,639 + SO0744 0.35 +0.8
762,649 - SO0744 0.36 +0.3
762,686 + SO0744 0.40 -0.1
762,694 - SO0744 0.40 -0.7
762,755 + SO0744 0.47 +0.0
762,763 - SO0744 0.47 +0.2
762,763 - SO0744 0.47 +0.7
762,775 - SO0744 0.49 +1.6
762,819 + SO0744 0.53 +0.5
762,985 - SO0744 0.69 +0.6
763,015 + SO0744 0.72 -0.6
763,179 - SO0744 0.89 -0.1
763,272 - +0.0
763,319 + +0.2
763,343 - -0.6
763,384 - -0.3
763,406 - -0.3
763,531 + -0.2
763,545 - +0.3
763,626 + SO0745 0.28 -0.0
763,634 - SO0745 0.30 +0.4
763,634 - SO0745 0.30 +0.1
763,636 - SO0745 0.30 +0.1
763,649 - SO0745 0.33 -0.8
763,698 + SO0745 0.45 -0.3
763,781 - SO0745 0.65 +0.2
763,811 + SO0745 0.72 -0.7
763,811 + SO0745 0.72 -0.4
763,898 + +0.3
763,906 - +0.0
763,932 + -0.7
763,940 - +0.0
763,979 + +0.0
764,067 + SO0746 0.22 +0.1
764,075 - SO0746 0.23 +0.2
764,236 - SO0746 0.50 -0.0
764,271 + SO0746 0.56 -1.5
764,271 + SO0746 0.56 +0.2
764,271 + SO0746 0.56 -1.4
764,271 + SO0746 0.56 +0.5
764,271 + SO0746 0.56 -0.1
764,271 + SO0746 0.56 -0.1
764,279 - SO0746 0.58 +0.5
764,279 - SO0746 0.58 -0.2
764,279 - SO0746 0.58 -0.7
764,279 - SO0746 0.58 -0.4

Or see this region's nucleotide sequence