Strain Fitness in Marinobacter adhaerens HP15 around HP15_880

Experiment: m.b. Fusidic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_878 and HP15_879 are separated by 84 nucleotidesHP15_879 and HP15_880 are separated by 57 nucleotidesHP15_880 and HP15_881 are separated by 4 nucleotidesHP15_881 and HP15_882 are separated by 72 nucleotides HP15_878: HP15_878 - conserved hypothetical protein, at 895,598 to 895,924 _878 HP15_879: HP15_879 - short-chain dehydrogenase/reductase SDR, at 896,009 to 896,683 _879 HP15_880: HP15_880 - oxidoreductase, short chain dehydrogenase/reductase family, at 896,741 to 897,472 _880 HP15_881: HP15_881 - 2',5' RNA ligase, at 897,477 to 898,019 _881 HP15_882: HP15_882 - hydrolase, carbon-nitrogen family protein, at 898,092 to 899,660 _882 Position (kb) 896 897 898Strain fitness (log2 ratio) -2 -1 0 1at 895.741 kb on - strand, within HP15_878at 895.743 kb on - strand, within HP15_878at 895.763 kb on + strand, within HP15_878at 895.851 kb on + strand, within HP15_878at 895.859 kb on - strand, within HP15_878at 895.939 kb on - strandat 895.939 kb on - strandat 896.167 kb on - strand, within HP15_879at 896.294 kb on - strand, within HP15_879at 896.334 kb on + strand, within HP15_879at 896.342 kb on - strand, within HP15_879at 896.385 kb on - strand, within HP15_879at 896.433 kb on + strand, within HP15_879at 896.443 kb on - strand, within HP15_879at 896.514 kb on + strand, within HP15_879at 896.514 kb on + strand, within HP15_879at 896.514 kb on + strand, within HP15_879at 896.547 kb on + strand, within HP15_879at 896.676 kb on - strandat 896.917 kb on + strand, within HP15_880at 897.091 kb on - strand, within HP15_880at 897.129 kb on + strand, within HP15_880at 897.189 kb on - strand, within HP15_880at 897.278 kb on + strand, within HP15_880at 897.281 kb on - strand, within HP15_880at 897.288 kb on + strand, within HP15_880at 897.296 kb on - strand, within HP15_880at 897.326 kb on + strand, within HP15_880at 897.345 kb on + strand, within HP15_880at 897.345 kb on + strand, within HP15_880at 897.353 kb on - strand, within HP15_880at 897.353 kb on - strand, within HP15_880at 897.353 kb on - strand, within HP15_880at 897.353 kb on - strand, within HP15_880at 897.448 kb on - strandat 897.566 kb on + strand, within HP15_881at 897.579 kb on - strand, within HP15_881at 897.579 kb on - strand, within HP15_881at 897.587 kb on + strand, within HP15_881at 897.646 kb on - strand, within HP15_881at 897.747 kb on - strand, within HP15_881at 897.851 kb on - strand, within HP15_881at 897.918 kb on - strand, within HP15_881at 897.955 kb on + strand, within HP15_881at 897.963 kb on - strand, within HP15_881at 898.144 kb on + strandat 898.238 kb on + strandat 898.246 kb on - strandat 898.246 kb on - strandat 898.411 kb on + strand, within HP15_882

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.03 mg/ml
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895,741 - HP15_878 0.44 +0.3
895,743 - HP15_878 0.44 -2.2
895,763 + HP15_878 0.50 +0.7
895,851 + HP15_878 0.77 -0.4
895,859 - HP15_878 0.80 -0.7
895,939 - +0.7
895,939 - +0.1
896,167 - HP15_879 0.23 +0.0
896,294 - HP15_879 0.42 +0.3
896,334 + HP15_879 0.48 -0.1
896,342 - HP15_879 0.49 +0.5
896,385 - HP15_879 0.56 -0.0
896,433 + HP15_879 0.63 +0.1
896,443 - HP15_879 0.64 -0.2
896,514 + HP15_879 0.75 +0.3
896,514 + HP15_879 0.75 +0.3
896,514 + HP15_879 0.75 +0.2
896,547 + HP15_879 0.80 +0.1
896,676 - -2.1
896,917 + HP15_880 0.24 +0.5
897,091 - HP15_880 0.48 +0.2
897,129 + HP15_880 0.53 -0.3
897,189 - HP15_880 0.61 -0.2
897,278 + HP15_880 0.73 +1.0
897,281 - HP15_880 0.74 +0.0
897,288 + HP15_880 0.75 +0.4
897,296 - HP15_880 0.76 -0.1
897,326 + HP15_880 0.80 +0.6
897,345 + HP15_880 0.83 +0.6
897,345 + HP15_880 0.83 -0.2
897,353 - HP15_880 0.84 +0.3
897,353 - HP15_880 0.84 +0.4
897,353 - HP15_880 0.84 +1.0
897,353 - HP15_880 0.84 +0.2
897,448 - +0.8
897,566 + HP15_881 0.16 +0.2
897,579 - HP15_881 0.19 +0.2
897,579 - HP15_881 0.19 +0.0
897,587 + HP15_881 0.20 -0.0
897,646 - HP15_881 0.31 -0.5
897,747 - HP15_881 0.50 -0.5
897,851 - HP15_881 0.69 -0.7
897,918 - HP15_881 0.81 -1.7
897,955 + HP15_881 0.88 +0.2
897,963 - HP15_881 0.90 +0.8
898,144 + -0.4
898,238 + -0.9
898,246 - +0.9
898,246 - +0.6
898,411 + HP15_882 0.20 +0.1

Or see this region's nucleotide sequence