Experiment: m.b. Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07980 and PGA1_c07990 overlap by 1 nucleotides PGA1_c07990 and PGA1_c08000 are separated by 44 nucleotides PGA1_c08000 and PGA1_c08010 overlap by 4 nucleotides PGA1_c08010 and PGA1_c08020 overlap by 4 nucleotides
PGA1_c07980: PGA1_c07980 - metallo beta-lactamase domain-containing protein, at 828,234 to 829,031
_c07980
PGA1_c07990: PGA1_c07990 - putative hydrolase, TatD family, at 829,031 to 829,852
_c07990
PGA1_c08000: PGA1_c08000 - DNA polymerase III, gamma/tau subunits, at 829,897 to 831,018
_c08000
PGA1_c08010: PGA1_c08010 - putative thymidylate kinase, at 831,015 to 831,704
_c08010
PGA1_c08020: PGA1_c08020 - D-alanyl-D-alanine carboxypeptidase DacC, at 831,701 to 832,891
_c08020
Position (kb) 829
830
831
832 Strain fitness (log2 ratio) -1
0
1 at 828.938 kb on - strand, within PGA1_c07980 at 828.991 kb on - strand at 828.994 kb on - strand at 829.035 kb on - strand at 829.134 kb on - strand, within PGA1_c07990 at 829.150 kb on - strand, within PGA1_c07990 at 829.155 kb on + strand, within PGA1_c07990 at 829.155 kb on + strand, within PGA1_c07990 at 829.163 kb on - strand, within PGA1_c07990 at 829.201 kb on + strand, within PGA1_c07990 at 829.264 kb on + strand, within PGA1_c07990 at 829.272 kb on - strand, within PGA1_c07990 at 829.315 kb on - strand, within PGA1_c07990 at 829.326 kb on - strand, within PGA1_c07990 at 829.499 kb on + strand, within PGA1_c07990 at 829.507 kb on + strand, within PGA1_c07990 at 829.507 kb on + strand, within PGA1_c07990 at 829.515 kb on - strand, within PGA1_c07990 at 829.515 kb on - strand, within PGA1_c07990 at 829.525 kb on - strand, within PGA1_c07990 at 829.544 kb on + strand, within PGA1_c07990 at 829.636 kb on - strand, within PGA1_c07990 at 829.681 kb on + strand, within PGA1_c07990 at 829.723 kb on - strand, within PGA1_c07990 at 829.747 kb on - strand, within PGA1_c07990 at 829.801 kb on + strand at 829.857 kb on + strand at 829.872 kb on - strand at 829.898 kb on - strand at 829.912 kb on + strand at 829.912 kb on + strand at 831.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml remove 828,938 - PGA1_c07980 0.88 +1.6 828,991 - -1.3 828,994 - -0.1 829,035 - -1.7 829,134 - PGA1_c07990 0.13 -1.1 829,150 - PGA1_c07990 0.14 +1.4 829,155 + PGA1_c07990 0.15 +0.0 829,155 + PGA1_c07990 0.15 +0.0 829,163 - PGA1_c07990 0.16 +0.6 829,201 + PGA1_c07990 0.21 +0.0 829,264 + PGA1_c07990 0.28 +1.6 829,272 - PGA1_c07990 0.29 +1.6 829,315 - PGA1_c07990 0.35 -1.2 829,326 - PGA1_c07990 0.36 +0.0 829,499 + PGA1_c07990 0.57 +0.0 829,507 + PGA1_c07990 0.58 +1.6 829,507 + PGA1_c07990 0.58 +1.6 829,515 - PGA1_c07990 0.59 -0.6 829,515 - PGA1_c07990 0.59 -1.2 829,525 - PGA1_c07990 0.60 +0.6 829,544 + PGA1_c07990 0.62 -0.4 829,636 - PGA1_c07990 0.74 -0.1 829,681 + PGA1_c07990 0.79 +0.6 829,723 - PGA1_c07990 0.84 +1.6 829,747 - PGA1_c07990 0.87 -1.7 829,801 + +1.6 829,857 + +1.6 829,872 - +1.0 829,898 - +0.9 829,912 + +1.6 829,912 + -1.2 831,055 - +1.6
Or see this region's nucleotide sequence