Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07330

Experiment: m.b. Spectinomycin 0.00625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07310 and PGA1_c07320 are separated by 1 nucleotidesPGA1_c07320 and PGA1_c07330 are separated by 58 nucleotidesPGA1_c07330 and PGA1_c07340 are separated by 8 nucleotidesPGA1_c07340 and PGA1_c07350 overlap by 11 nucleotides PGA1_c07310: PGA1_c07310 - Inositol transport system permease protein (from data), at 752,766 to 753,887 _c07310 PGA1_c07320: PGA1_c07320 - Inositol transport system ATP-binding protein (from data), at 753,889 to 754,674 _c07320 PGA1_c07330: PGA1_c07330 - beta-galactosidase 1, at 754,733 to 756,652 _c07330 PGA1_c07340: PGA1_c07340 - Gluconolactonase, at 756,661 to 757,533 _c07340 PGA1_c07350: PGA1_c07350 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase DgoA, at 757,523 to 758,134 _c07350 Position (kb) 754 755 756 757Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 753.833 kb on - strandat 753.866 kb on + strandat 753.891 kb on + strandat 753.899 kb on - strandat 753.904 kb on + strandat 753.912 kb on - strandat 753.976 kb on - strand, within PGA1_c07320at 754.026 kb on + strand, within PGA1_c07320at 754.043 kb on - strand, within PGA1_c07320at 754.231 kb on - strand, within PGA1_c07320at 754.281 kb on - strand, within PGA1_c07320at 754.284 kb on - strand, within PGA1_c07320at 754.295 kb on + strand, within PGA1_c07320at 754.313 kb on - strand, within PGA1_c07320at 754.318 kb on - strand, within PGA1_c07320at 754.355 kb on - strand, within PGA1_c07320at 754.393 kb on - strand, within PGA1_c07320at 754.425 kb on + strand, within PGA1_c07320at 754.447 kb on - strand, within PGA1_c07320at 754.479 kb on + strand, within PGA1_c07320at 754.502 kb on + strand, within PGA1_c07320at 754.546 kb on + strand, within PGA1_c07320at 754.546 kb on + strand, within PGA1_c07320at 754.565 kb on - strand, within PGA1_c07320at 754.566 kb on + strand, within PGA1_c07320at 754.566 kb on + strand, within PGA1_c07320at 754.566 kb on + strand, within PGA1_c07320at 754.566 kb on + strand, within PGA1_c07320at 754.571 kb on + strand, within PGA1_c07320at 754.574 kb on - strand, within PGA1_c07320at 754.598 kb on - strandat 754.664 kb on - strandat 754.716 kb on - strandat 754.754 kb on + strandat 754.857 kb on + strandat 755.008 kb on - strand, within PGA1_c07330at 755.112 kb on + strand, within PGA1_c07330at 755.181 kb on + strand, within PGA1_c07330at 755.193 kb on + strand, within PGA1_c07330at 755.201 kb on - strand, within PGA1_c07330at 755.201 kb on - strand, within PGA1_c07330at 755.226 kb on + strand, within PGA1_c07330at 755.226 kb on + strand, within PGA1_c07330at 755.236 kb on + strand, within PGA1_c07330at 755.247 kb on + strand, within PGA1_c07330at 755.252 kb on + strand, within PGA1_c07330at 755.260 kb on - strand, within PGA1_c07330at 755.275 kb on + strand, within PGA1_c07330at 755.283 kb on - strand, within PGA1_c07330at 755.308 kb on - strand, within PGA1_c07330at 755.321 kb on + strand, within PGA1_c07330at 755.329 kb on - strand, within PGA1_c07330at 755.336 kb on + strand, within PGA1_c07330at 755.344 kb on - strand, within PGA1_c07330at 755.349 kb on - strand, within PGA1_c07330at 755.349 kb on - strand, within PGA1_c07330at 755.362 kb on - strand, within PGA1_c07330at 755.398 kb on + strand, within PGA1_c07330at 755.408 kb on + strand, within PGA1_c07330at 755.480 kb on - strand, within PGA1_c07330at 755.613 kb on - strand, within PGA1_c07330at 755.634 kb on + strand, within PGA1_c07330at 755.642 kb on - strand, within PGA1_c07330at 755.642 kb on - strand, within PGA1_c07330at 755.654 kb on + strand, within PGA1_c07330at 755.667 kb on + strand, within PGA1_c07330at 755.692 kb on - strand, within PGA1_c07330at 755.739 kb on + strand, within PGA1_c07330at 755.811 kb on - strand, within PGA1_c07330at 755.815 kb on + strand, within PGA1_c07330at 755.875 kb on - strand, within PGA1_c07330at 755.883 kb on + strand, within PGA1_c07330at 755.883 kb on + strand, within PGA1_c07330at 755.883 kb on + strand, within PGA1_c07330at 755.891 kb on - strand, within PGA1_c07330at 755.901 kb on - strand, within PGA1_c07330at 756.013 kb on - strand, within PGA1_c07330at 756.038 kb on - strand, within PGA1_c07330at 756.040 kb on - strand, within PGA1_c07330at 756.061 kb on - strand, within PGA1_c07330at 756.107 kb on + strand, within PGA1_c07330at 756.107 kb on + strand, within PGA1_c07330at 756.115 kb on - strand, within PGA1_c07330at 756.151 kb on + strand, within PGA1_c07330at 756.159 kb on - strand, within PGA1_c07330at 756.163 kb on + strand, within PGA1_c07330at 756.164 kb on + strand, within PGA1_c07330at 756.223 kb on - strand, within PGA1_c07330at 756.298 kb on + strand, within PGA1_c07330at 756.298 kb on + strand, within PGA1_c07330at 756.301 kb on + strand, within PGA1_c07330at 756.343 kb on + strand, within PGA1_c07330at 756.351 kb on - strand, within PGA1_c07330at 756.351 kb on - strand, within PGA1_c07330at 756.418 kb on + strand, within PGA1_c07330at 756.432 kb on - strand, within PGA1_c07330at 756.481 kb on + strandat 756.557 kb on + strandat 756.557 kb on + strandat 756.557 kb on + strandat 756.599 kb on + strandat 756.624 kb on - strandat 756.640 kb on - strandat 756.640 kb on - strandat 756.640 kb on - strandat 756.647 kb on - strandat 756.657 kb on - strandat 756.715 kb on + strandat 756.715 kb on + strandat 756.715 kb on + strandat 756.735 kb on + strandat 756.823 kb on - strand, within PGA1_c07340at 756.861 kb on - strand, within PGA1_c07340at 756.888 kb on - strand, within PGA1_c07340at 757.033 kb on - strand, within PGA1_c07340at 757.222 kb on + strand, within PGA1_c07340at 757.230 kb on - strand, within PGA1_c07340at 757.230 kb on - strand, within PGA1_c07340at 757.231 kb on - strand, within PGA1_c07340at 757.258 kb on + strand, within PGA1_c07340at 757.307 kb on + strand, within PGA1_c07340at 757.315 kb on - strand, within PGA1_c07340at 757.320 kb on - strand, within PGA1_c07340at 757.320 kb on - strand, within PGA1_c07340at 757.320 kb on - strand, within PGA1_c07340at 757.346 kb on + strand, within PGA1_c07340at 757.381 kb on + strand, within PGA1_c07340at 757.424 kb on - strand, within PGA1_c07340at 757.495 kb on - strandat 757.591 kb on - strand, within PGA1_c07350at 757.610 kb on - strand, within PGA1_c07350at 757.610 kb on - strand, within PGA1_c07350

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml
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753,833 - -0.2
753,866 + +0.2
753,891 + +1.0
753,899 - -1.1
753,904 + -0.1
753,912 - -0.0
753,976 - PGA1_c07320 0.11 -3.3
754,026 + PGA1_c07320 0.17 -0.8
754,043 - PGA1_c07320 0.20 +0.9
754,231 - PGA1_c07320 0.44 +1.3
754,281 - PGA1_c07320 0.50 +0.9
754,284 - PGA1_c07320 0.50 -0.3
754,295 + PGA1_c07320 0.52 +0.6
754,313 - PGA1_c07320 0.54 -0.4
754,318 - PGA1_c07320 0.55 +1.0
754,355 - PGA1_c07320 0.59 -0.1
754,393 - PGA1_c07320 0.64 +0.1
754,425 + PGA1_c07320 0.68 -1.8
754,447 - PGA1_c07320 0.71 -0.9
754,479 + PGA1_c07320 0.75 +0.2
754,502 + PGA1_c07320 0.78 -0.2
754,546 + PGA1_c07320 0.84 +0.5
754,546 + PGA1_c07320 0.84 -0.6
754,565 - PGA1_c07320 0.86 +0.6
754,566 + PGA1_c07320 0.86 -1.7
754,566 + PGA1_c07320 0.86 -1.7
754,566 + PGA1_c07320 0.86 +0.1
754,566 + PGA1_c07320 0.86 -1.1
754,571 + PGA1_c07320 0.87 +0.2
754,574 - PGA1_c07320 0.87 +1.1
754,598 - +0.2
754,664 - -0.5
754,716 - -0.7
754,754 + -0.9
754,857 + +0.1
755,008 - PGA1_c07330 0.14 +0.6
755,112 + PGA1_c07330 0.20 +1.2
755,181 + PGA1_c07330 0.23 +0.2
755,193 + PGA1_c07330 0.24 -2.3
755,201 - PGA1_c07330 0.24 +0.1
755,201 - PGA1_c07330 0.24 +1.2
755,226 + PGA1_c07330 0.26 +0.2
755,226 + PGA1_c07330 0.26 -0.4
755,236 + PGA1_c07330 0.26 -0.9
755,247 + PGA1_c07330 0.27 -0.9
755,252 + PGA1_c07330 0.27 +0.6
755,260 - PGA1_c07330 0.27 +0.1
755,275 + PGA1_c07330 0.28 -1.6
755,283 - PGA1_c07330 0.29 -0.7
755,308 - PGA1_c07330 0.30 +0.1
755,321 + PGA1_c07330 0.31 -0.1
755,329 - PGA1_c07330 0.31 +0.5
755,336 + PGA1_c07330 0.31 -0.4
755,344 - PGA1_c07330 0.32 -2.3
755,349 - PGA1_c07330 0.32 +0.1
755,349 - PGA1_c07330 0.32 +1.0
755,362 - PGA1_c07330 0.33 -1.1
755,398 + PGA1_c07330 0.35 +0.5
755,408 + PGA1_c07330 0.35 -2.5
755,480 - PGA1_c07330 0.39 +0.2
755,613 - PGA1_c07330 0.46 +0.2
755,634 + PGA1_c07330 0.47 -0.6
755,642 - PGA1_c07330 0.47 +0.1
755,642 - PGA1_c07330 0.47 -0.4
755,654 + PGA1_c07330 0.48 +0.3
755,667 + PGA1_c07330 0.49 +0.6
755,692 - PGA1_c07330 0.50 +0.3
755,739 + PGA1_c07330 0.52 -0.4
755,811 - PGA1_c07330 0.56 +0.6
755,815 + PGA1_c07330 0.56 +1.6
755,875 - PGA1_c07330 0.59 -0.2
755,883 + PGA1_c07330 0.60 -1.5
755,883 + PGA1_c07330 0.60 -1.9
755,883 + PGA1_c07330 0.60 -0.9
755,891 - PGA1_c07330 0.60 +0.4
755,901 - PGA1_c07330 0.61 +0.2
756,013 - PGA1_c07330 0.67 +0.9
756,038 - PGA1_c07330 0.68 -0.3
756,040 - PGA1_c07330 0.68 +0.7
756,061 - PGA1_c07330 0.69 -0.6
756,107 + PGA1_c07330 0.72 +0.7
756,107 + PGA1_c07330 0.72 -0.1
756,115 - PGA1_c07330 0.72 -0.5
756,151 + PGA1_c07330 0.74 +0.3
756,159 - PGA1_c07330 0.74 -0.2
756,163 + PGA1_c07330 0.74 +2.1
756,164 + PGA1_c07330 0.75 -0.4
756,223 - PGA1_c07330 0.78 -1.5
756,298 + PGA1_c07330 0.82 -0.1
756,298 + PGA1_c07330 0.82 +1.5
756,301 + PGA1_c07330 0.82 -0.5
756,343 + PGA1_c07330 0.84 -0.2
756,351 - PGA1_c07330 0.84 -1.7
756,351 - PGA1_c07330 0.84 +0.9
756,418 + PGA1_c07330 0.88 +0.9
756,432 - PGA1_c07330 0.88 -0.5
756,481 + +1.2
756,557 + -2.1
756,557 + -1.4
756,557 + +1.4
756,599 + +0.8
756,624 - +1.5
756,640 - +0.3
756,640 - -0.4
756,640 - -0.5
756,647 - +0.9
756,657 - -0.4
756,715 + -0.6
756,715 + +1.0
756,715 + -0.2
756,735 + -1.3
756,823 - PGA1_c07340 0.19 -1.6
756,861 - PGA1_c07340 0.23 -1.5
756,888 - PGA1_c07340 0.26 -1.0
757,033 - PGA1_c07340 0.43 -0.9
757,222 + PGA1_c07340 0.64 +0.5
757,230 - PGA1_c07340 0.65 +1.0
757,230 - PGA1_c07340 0.65 -0.8
757,231 - PGA1_c07340 0.65 +0.2
757,258 + PGA1_c07340 0.68 -0.5
757,307 + PGA1_c07340 0.74 -0.7
757,315 - PGA1_c07340 0.75 +0.1
757,320 - PGA1_c07340 0.75 -0.5
757,320 - PGA1_c07340 0.75 +1.3
757,320 - PGA1_c07340 0.75 -0.5
757,346 + PGA1_c07340 0.78 +1.6
757,381 + PGA1_c07340 0.82 -0.3
757,424 - PGA1_c07340 0.87 +0.1
757,495 - +0.2
757,591 - PGA1_c07350 0.11 -1.1
757,610 - PGA1_c07350 0.14 -0.8
757,610 - PGA1_c07350 0.14 -1.0

Or see this region's nucleotide sequence