Experiment: m.b. Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06690 and PGA1_c06700 are separated by 224 nucleotides PGA1_c06700 and PGA1_c06710 are separated by 143 nucleotides
PGA1_c06690: PGA1_c06690 - prephenate deydrogenase-like protein, at 686,417 to 687,202
_c06690
PGA1_c06700: PGA1_c06700 - Integral membrane protein, at 687,427 to 687,912
_c06700
PGA1_c06710: PGA1_c06710 - cytochrome c oxidase subunit 1-beta, at 688,056 to 689,729
_c06710
Position (kb) 687
688 Strain fitness (log2 ratio) -2
-1
0
1
2 at 686.441 kb on + strand at 686.441 kb on + strand at 686.502 kb on - strand, within PGA1_c06690 at 686.544 kb on + strand, within PGA1_c06690 at 686.547 kb on - strand, within PGA1_c06690 at 686.564 kb on - strand, within PGA1_c06690 at 686.583 kb on - strand, within PGA1_c06690 at 686.607 kb on - strand, within PGA1_c06690 at 686.677 kb on - strand, within PGA1_c06690 at 686.677 kb on - strand, within PGA1_c06690 at 686.683 kb on - strand, within PGA1_c06690 at 686.699 kb on + strand, within PGA1_c06690 at 686.726 kb on - strand, within PGA1_c06690 at 686.726 kb on - strand, within PGA1_c06690 at 686.728 kb on + strand, within PGA1_c06690 at 686.736 kb on - strand, within PGA1_c06690 at 686.736 kb on - strand, within PGA1_c06690 at 686.747 kb on + strand, within PGA1_c06690 at 686.786 kb on - strand, within PGA1_c06690 at 686.838 kb on + strand, within PGA1_c06690 at 686.846 kb on + strand, within PGA1_c06690 at 686.846 kb on + strand, within PGA1_c06690 at 686.851 kb on + strand, within PGA1_c06690 at 686.854 kb on - strand, within PGA1_c06690 at 686.962 kb on - strand, within PGA1_c06690 at 686.975 kb on + strand, within PGA1_c06690 at 687.035 kb on - strand, within PGA1_c06690 at 687.120 kb on + strand, within PGA1_c06690 at 687.127 kb on + strand at 687.169 kb on + strand at 687.177 kb on - strand at 687.177 kb on - strand at 687.177 kb on - strand at 687.182 kb on + strand at 687.192 kb on + strand at 687.192 kb on + strand at 687.217 kb on + strand at 687.257 kb on + strand at 687.265 kb on - strand at 687.288 kb on + strand at 687.325 kb on - strand at 687.325 kb on - strand at 687.364 kb on + strand at 687.372 kb on - strand at 687.372 kb on - strand at 687.392 kb on + strand at 687.426 kb on + strand at 687.480 kb on - strand, within PGA1_c06700 at 687.518 kb on + strand, within PGA1_c06700 at 687.526 kb on - strand, within PGA1_c06700 at 687.528 kb on + strand, within PGA1_c06700 at 687.528 kb on + strand, within PGA1_c06700 at 687.528 kb on + strand, within PGA1_c06700 at 687.536 kb on - strand, within PGA1_c06700 at 687.536 kb on - strand, within PGA1_c06700 at 687.609 kb on - strand, within PGA1_c06700 at 687.609 kb on - strand, within PGA1_c06700 at 687.651 kb on + strand, within PGA1_c06700 at 687.651 kb on + strand, within PGA1_c06700 at 687.651 kb on + strand, within PGA1_c06700 at 687.659 kb on - strand, within PGA1_c06700 at 687.659 kb on - strand, within PGA1_c06700 at 687.739 kb on + strand, within PGA1_c06700 at 687.747 kb on - strand, within PGA1_c06700 at 687.757 kb on - strand, within PGA1_c06700 at 687.764 kb on + strand, within PGA1_c06700 at 687.764 kb on - strand, within PGA1_c06700 at 687.829 kb on + strand, within PGA1_c06700 at 687.829 kb on + strand, within PGA1_c06700 at 687.829 kb on + strand, within PGA1_c06700 at 687.863 kb on - strand, within PGA1_c06700 at 687.878 kb on + strand at 687.878 kb on + strand at 687.926 kb on + strand at 687.942 kb on + strand at 687.950 kb on + strand at 687.950 kb on + strand at 687.950 kb on - strand at 687.950 kb on - strand at 687.955 kb on - strand at 688.082 kb on - strand at 688.699 kb on + strand, within PGA1_c06710
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml remove 686,441 + +0.3 686,441 + +0.4 686,502 - PGA1_c06690 0.11 +1.1 686,544 + PGA1_c06690 0.16 +0.9 686,547 - PGA1_c06690 0.17 +1.7 686,564 - PGA1_c06690 0.19 -1.7 686,583 - PGA1_c06690 0.21 +1.9 686,607 - PGA1_c06690 0.24 +1.1 686,677 - PGA1_c06690 0.33 +0.1 686,677 - PGA1_c06690 0.33 -0.0 686,683 - PGA1_c06690 0.34 -0.9 686,699 + PGA1_c06690 0.36 -0.2 686,726 - PGA1_c06690 0.39 +0.1 686,726 - PGA1_c06690 0.39 +0.7 686,728 + PGA1_c06690 0.40 -1.5 686,736 - PGA1_c06690 0.41 -0.7 686,736 - PGA1_c06690 0.41 -1.3 686,747 + PGA1_c06690 0.42 -0.1 686,786 - PGA1_c06690 0.47 +0.1 686,838 + PGA1_c06690 0.54 +1.7 686,846 + PGA1_c06690 0.55 -0.4 686,846 + PGA1_c06690 0.55 +1.1 686,851 + PGA1_c06690 0.55 +0.7 686,854 - PGA1_c06690 0.56 -0.3 686,962 - PGA1_c06690 0.69 -1.0 686,975 + PGA1_c06690 0.71 -1.3 687,035 - PGA1_c06690 0.79 -0.9 687,120 + PGA1_c06690 0.89 +1.2 687,127 + +0.4 687,169 + -0.9 687,177 - -0.3 687,177 - +1.8 687,177 - -0.2 687,182 + +0.7 687,192 + +0.5 687,192 + -0.9 687,217 + -0.2 687,257 + +0.7 687,265 - +1.7 687,288 + -1.9 687,325 - -0.8 687,325 - +0.1 687,364 + -0.3 687,372 - -1.7 687,372 - -1.1 687,392 + +0.1 687,426 + -1.1 687,480 - PGA1_c06700 0.11 +0.3 687,518 + PGA1_c06700 0.19 +0.1 687,526 - PGA1_c06700 0.20 +0.8 687,528 + PGA1_c06700 0.21 -0.9 687,528 + PGA1_c06700 0.21 -0.1 687,528 + PGA1_c06700 0.21 +0.9 687,536 - PGA1_c06700 0.22 +1.7 687,536 - PGA1_c06700 0.22 -0.7 687,609 - PGA1_c06700 0.37 +0.3 687,609 - PGA1_c06700 0.37 +0.8 687,651 + PGA1_c06700 0.46 -1.2 687,651 + PGA1_c06700 0.46 +0.7 687,651 + PGA1_c06700 0.46 +1.7 687,659 - PGA1_c06700 0.48 +1.4 687,659 - PGA1_c06700 0.48 +0.7 687,739 + PGA1_c06700 0.64 +1.0 687,747 - PGA1_c06700 0.66 -0.5 687,757 - PGA1_c06700 0.68 +0.0 687,764 + PGA1_c06700 0.69 -1.0 687,764 - PGA1_c06700 0.69 +1.3 687,829 + PGA1_c06700 0.83 +1.1 687,829 + PGA1_c06700 0.83 +1.7 687,829 + PGA1_c06700 0.83 -0.9 687,863 - PGA1_c06700 0.90 +1.7 687,878 + -2.0 687,878 + +0.7 687,926 + +0.0 687,942 + -0.5 687,950 + +0.1 687,950 + -0.9 687,950 - +0.7 687,950 - -0.9 687,955 - +1.3 688,082 - -0.7 688,699 + PGA1_c06710 0.38 -1.1
Or see this region's nucleotide sequence