Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04260

Experiment: m.b. Spectinomycin 0.00625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04240 and PGA1_c04250 overlap by 1 nucleotidesPGA1_c04250 and PGA1_c04260 are separated by 3 nucleotidesPGA1_c04260 and PGA1_c04270 are separated by 220 nucleotides PGA1_c04240: PGA1_c04240 - protein PhnG, at 411,436 to 411,912 _c04240 PGA1_c04250: PGA1_c04250 - protein PhnH, at 411,912 to 412,508 _c04250 PGA1_c04260: PGA1_c04260 - protein PhnI, at 412,512 to 413,621 _c04260 PGA1_c04270: PGA1_c04270 - protein PhnJ, at 413,842 to 414,699 _c04270 Position (kb) 412 413 414Strain fitness (log2 ratio) -2 -1 0 1 2at 411.568 kb on + strand, within PGA1_c04240at 411.594 kb on + strand, within PGA1_c04240at 411.608 kb on + strand, within PGA1_c04240at 411.640 kb on + strand, within PGA1_c04240at 411.648 kb on - strand, within PGA1_c04240at 411.740 kb on - strand, within PGA1_c04240at 411.814 kb on + strand, within PGA1_c04240at 411.816 kb on - strand, within PGA1_c04240at 411.838 kb on + strand, within PGA1_c04240at 411.906 kb on + strandat 411.931 kb on - strandat 412.031 kb on + strand, within PGA1_c04250at 412.031 kb on + strand, within PGA1_c04250at 412.047 kb on - strand, within PGA1_c04250at 412.086 kb on - strand, within PGA1_c04250at 412.151 kb on - strand, within PGA1_c04250at 412.179 kb on + strand, within PGA1_c04250at 412.179 kb on + strand, within PGA1_c04250at 412.179 kb on - strand, within PGA1_c04250at 412.187 kb on - strand, within PGA1_c04250at 412.187 kb on - strand, within PGA1_c04250at 412.189 kb on + strand, within PGA1_c04250at 412.197 kb on - strand, within PGA1_c04250at 412.222 kb on + strand, within PGA1_c04250at 412.223 kb on - strand, within PGA1_c04250at 412.230 kb on - strand, within PGA1_c04250at 412.238 kb on + strand, within PGA1_c04250at 412.258 kb on + strand, within PGA1_c04250at 412.309 kb on - strand, within PGA1_c04250at 412.347 kb on - strand, within PGA1_c04250at 412.354 kb on - strand, within PGA1_c04250at 412.355 kb on - strand, within PGA1_c04250at 412.402 kb on - strand, within PGA1_c04250at 412.459 kb on - strandat 412.463 kb on + strandat 412.463 kb on + strandat 412.463 kb on + strandat 412.463 kb on + strandat 412.471 kb on - strandat 412.490 kb on + strandat 412.579 kb on + strandat 412.602 kb on + strandat 412.610 kb on - strandat 412.610 kb on - strandat 412.614 kb on + strandat 412.639 kb on - strand, within PGA1_c04260at 412.652 kb on + strand, within PGA1_c04260at 412.658 kb on + strand, within PGA1_c04260at 412.658 kb on + strand, within PGA1_c04260at 412.658 kb on + strand, within PGA1_c04260at 412.660 kb on - strand, within PGA1_c04260at 412.719 kb on + strand, within PGA1_c04260at 412.727 kb on - strand, within PGA1_c04260at 412.727 kb on - strand, within PGA1_c04260at 412.833 kb on + strand, within PGA1_c04260at 412.855 kb on + strand, within PGA1_c04260at 412.870 kb on - strand, within PGA1_c04260at 412.922 kb on - strand, within PGA1_c04260at 412.924 kb on + strand, within PGA1_c04260at 412.943 kb on + strand, within PGA1_c04260at 412.961 kb on - strand, within PGA1_c04260at 413.024 kb on + strand, within PGA1_c04260at 413.032 kb on - strand, within PGA1_c04260at 413.116 kb on - strand, within PGA1_c04260at 413.118 kb on + strand, within PGA1_c04260at 413.126 kb on - strand, within PGA1_c04260at 413.133 kb on - strand, within PGA1_c04260at 413.144 kb on - strand, within PGA1_c04260at 413.240 kb on - strand, within PGA1_c04260at 413.284 kb on + strand, within PGA1_c04260at 413.284 kb on + strand, within PGA1_c04260at 413.292 kb on - strand, within PGA1_c04260at 413.292 kb on - strand, within PGA1_c04260at 413.292 kb on - strand, within PGA1_c04260at 413.294 kb on + strand, within PGA1_c04260at 413.302 kb on - strand, within PGA1_c04260at 413.303 kb on + strand, within PGA1_c04260at 413.311 kb on - strand, within PGA1_c04260at 413.324 kb on + strand, within PGA1_c04260at 413.384 kb on - strand, within PGA1_c04260at 413.385 kb on - strand, within PGA1_c04260at 413.395 kb on - strand, within PGA1_c04260at 413.407 kb on + strand, within PGA1_c04260at 413.407 kb on + strand, within PGA1_c04260at 413.429 kb on + strand, within PGA1_c04260at 413.437 kb on + strand, within PGA1_c04260at 413.460 kb on + strand, within PGA1_c04260at 413.486 kb on + strand, within PGA1_c04260at 413.507 kb on + strand, within PGA1_c04260at 413.507 kb on + strand, within PGA1_c04260at 413.507 kb on + strand, within PGA1_c04260at 413.654 kb on + strandat 413.654 kb on + strandat 413.654 kb on + strandat 413.662 kb on - strandat 413.662 kb on - strandat 413.662 kb on - strandat 413.662 kb on - strandat 413.710 kb on + strandat 413.725 kb on + strandat 413.730 kb on + strandat 413.733 kb on - strandat 413.777 kb on - strandat 413.777 kb on - strandat 413.848 kb on + strandat 413.920 kb on - strandat 413.965 kb on + strand, within PGA1_c04270at 413.984 kb on - strand, within PGA1_c04270at 413.987 kb on + strand, within PGA1_c04270at 413.997 kb on - strand, within PGA1_c04270at 414.002 kb on - strand, within PGA1_c04270at 414.002 kb on - strand, within PGA1_c04270at 414.059 kb on + strand, within PGA1_c04270at 414.059 kb on + strand, within PGA1_c04270at 414.060 kb on - strand, within PGA1_c04270at 414.096 kb on + strand, within PGA1_c04270at 414.137 kb on + strand, within PGA1_c04270at 414.150 kb on - strand, within PGA1_c04270at 414.186 kb on + strand, within PGA1_c04270at 414.228 kb on - strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.331 kb on + strand, within PGA1_c04270at 414.347 kb on - strand, within PGA1_c04270at 414.411 kb on + strand, within PGA1_c04270at 414.441 kb on + strand, within PGA1_c04270at 414.452 kb on + strand, within PGA1_c04270at 414.452 kb on + strand, within PGA1_c04270at 414.452 kb on + strand, within PGA1_c04270at 414.460 kb on - strand, within PGA1_c04270at 414.460 kb on - strand, within PGA1_c04270at 414.460 kb on - strand, within PGA1_c04270at 414.473 kb on - strand, within PGA1_c04270at 414.473 kb on - strand, within PGA1_c04270at 414.488 kb on - strand, within PGA1_c04270at 414.531 kb on + strand, within PGA1_c04270at 414.531 kb on + strand, within PGA1_c04270at 414.544 kb on - strand, within PGA1_c04270at 414.544 kb on - strand, within PGA1_c04270at 414.573 kb on - strand, within PGA1_c04270at 414.576 kb on - strand, within PGA1_c04270

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml
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411,568 + PGA1_c04240 0.28 -0.1
411,594 + PGA1_c04240 0.33 +0.9
411,608 + PGA1_c04240 0.36 +0.1
411,640 + PGA1_c04240 0.43 +0.1
411,648 - PGA1_c04240 0.44 +0.3
411,740 - PGA1_c04240 0.64 +0.4
411,814 + PGA1_c04240 0.79 -1.4
411,816 - PGA1_c04240 0.80 +0.1
411,838 + PGA1_c04240 0.84 +0.3
411,906 + -0.4
411,931 - +0.4
412,031 + PGA1_c04250 0.20 -0.7
412,031 + PGA1_c04250 0.20 -0.5
412,047 - PGA1_c04250 0.23 +0.7
412,086 - PGA1_c04250 0.29 +0.7
412,151 - PGA1_c04250 0.40 -1.1
412,179 + PGA1_c04250 0.45 +0.9
412,179 + PGA1_c04250 0.45 +0.6
412,179 - PGA1_c04250 0.45 +0.7
412,187 - PGA1_c04250 0.46 +0.4
412,187 - PGA1_c04250 0.46 +0.1
412,189 + PGA1_c04250 0.46 -0.3
412,197 - PGA1_c04250 0.48 -0.5
412,222 + PGA1_c04250 0.52 +0.1
412,223 - PGA1_c04250 0.52 -0.3
412,230 - PGA1_c04250 0.53 +0.5
412,238 + PGA1_c04250 0.55 -0.3
412,258 + PGA1_c04250 0.58 +0.5
412,309 - PGA1_c04250 0.66 -0.9
412,347 - PGA1_c04250 0.73 -1.3
412,354 - PGA1_c04250 0.74 +1.7
412,355 - PGA1_c04250 0.74 -1.6
412,402 - PGA1_c04250 0.82 +1.0
412,459 - +0.7
412,463 + +0.3
412,463 + +0.0
412,463 + +0.1
412,463 + +1.7
412,471 - -1.5
412,490 + +1.5
412,579 + +0.5
412,602 + +0.5
412,610 - +0.5
412,610 - +2.7
412,614 + -1.2
412,639 - PGA1_c04260 0.11 +0.6
412,652 + PGA1_c04260 0.13 +0.9
412,658 + PGA1_c04260 0.13 +0.6
412,658 + PGA1_c04260 0.13 +0.4
412,658 + PGA1_c04260 0.13 +1.0
412,660 - PGA1_c04260 0.13 +1.7
412,719 + PGA1_c04260 0.19 -0.6
412,727 - PGA1_c04260 0.19 +0.5
412,727 - PGA1_c04260 0.19 -0.9
412,833 + PGA1_c04260 0.29 -0.8
412,855 + PGA1_c04260 0.31 -2.5
412,870 - PGA1_c04260 0.32 +0.2
412,922 - PGA1_c04260 0.37 +0.1
412,924 + PGA1_c04260 0.37 +0.4
412,943 + PGA1_c04260 0.39 -0.3
412,961 - PGA1_c04260 0.40 -0.1
413,024 + PGA1_c04260 0.46 +0.7
413,032 - PGA1_c04260 0.47 -1.0
413,116 - PGA1_c04260 0.54 -0.9
413,118 + PGA1_c04260 0.55 -0.7
413,126 - PGA1_c04260 0.55 -0.1
413,133 - PGA1_c04260 0.56 -2.4
413,144 - PGA1_c04260 0.57 +2.1
413,240 - PGA1_c04260 0.66 +0.8
413,284 + PGA1_c04260 0.70 -1.9
413,284 + PGA1_c04260 0.70 +0.9
413,292 - PGA1_c04260 0.70 -0.2
413,292 - PGA1_c04260 0.70 +0.0
413,292 - PGA1_c04260 0.70 +1.0
413,294 + PGA1_c04260 0.70 -0.5
413,302 - PGA1_c04260 0.71 -0.1
413,303 + PGA1_c04260 0.71 -0.2
413,311 - PGA1_c04260 0.72 +0.6
413,324 + PGA1_c04260 0.73 -1.0
413,384 - PGA1_c04260 0.79 +0.4
413,385 - PGA1_c04260 0.79 -0.5
413,395 - PGA1_c04260 0.80 -1.6
413,407 + PGA1_c04260 0.81 +1.0
413,407 + PGA1_c04260 0.81 +2.2
413,429 + PGA1_c04260 0.83 +1.5
413,437 + PGA1_c04260 0.83 -0.5
413,460 + PGA1_c04260 0.85 -1.3
413,486 + PGA1_c04260 0.88 -1.7
413,507 + PGA1_c04260 0.90 -0.2
413,507 + PGA1_c04260 0.90 -1.9
413,507 + PGA1_c04260 0.90 +0.1
413,654 + +1.3
413,654 + +0.5
413,654 + -0.0
413,662 - -1.0
413,662 - +0.3
413,662 - +0.3
413,662 - -0.5
413,710 + +1.2
413,725 + -0.3
413,730 + +1.0
413,733 - +0.8
413,777 - +0.3
413,777 - -0.0
413,848 + +0.3
413,920 - +2.3
413,965 + PGA1_c04270 0.14 -0.2
413,984 - PGA1_c04270 0.17 -1.1
413,987 + PGA1_c04270 0.17 +0.2
413,997 - PGA1_c04270 0.18 -0.5
414,002 - PGA1_c04270 0.19 +0.1
414,002 - PGA1_c04270 0.19 -1.0
414,059 + PGA1_c04270 0.25 +1.5
414,059 + PGA1_c04270 0.25 -0.3
414,060 - PGA1_c04270 0.25 -0.7
414,096 + PGA1_c04270 0.30 +0.7
414,137 + PGA1_c04270 0.34 +1.7
414,150 - PGA1_c04270 0.36 -0.9
414,186 + PGA1_c04270 0.40 -0.1
414,228 - PGA1_c04270 0.45 +0.1
414,230 + PGA1_c04270 0.45 -1.5
414,230 + PGA1_c04270 0.45 +0.4
414,230 + PGA1_c04270 0.45 -0.9
414,230 + PGA1_c04270 0.45 +0.7
414,230 + PGA1_c04270 0.45 +0.7
414,230 + PGA1_c04270 0.45 +0.4
414,230 + PGA1_c04270 0.45 +0.8
414,230 + PGA1_c04270 0.45 +0.3
414,230 + PGA1_c04270 0.45 +1.4
414,230 + PGA1_c04270 0.45 +2.0
414,230 + PGA1_c04270 0.45 +0.1
414,230 + PGA1_c04270 0.45 +1.2
414,230 + PGA1_c04270 0.45 -0.7
414,230 + PGA1_c04270 0.45 +0.7
414,230 + PGA1_c04270 0.45 +1.7
414,230 + PGA1_c04270 0.45 -0.3
414,230 + PGA1_c04270 0.45 +1.1
414,230 + PGA1_c04270 0.45 +1.0
414,238 - PGA1_c04270 0.46 +0.7
414,238 - PGA1_c04270 0.46 +1.4
414,238 - PGA1_c04270 0.46 +0.7
414,238 - PGA1_c04270 0.46 -0.9
414,238 - PGA1_c04270 0.46 +0.1
414,238 - PGA1_c04270 0.46 +0.3
414,238 - PGA1_c04270 0.46 -0.6
414,238 - PGA1_c04270 0.46 +0.7
414,238 - PGA1_c04270 0.46 -0.9
414,238 - PGA1_c04270 0.46 -0.1
414,238 - PGA1_c04270 0.46 -1.5
414,238 - PGA1_c04270 0.46 +1.0
414,238 - PGA1_c04270 0.46 +0.7
414,238 - PGA1_c04270 0.46 +0.5
414,331 + PGA1_c04270 0.57 -0.3
414,347 - PGA1_c04270 0.59 +0.5
414,411 + PGA1_c04270 0.66 +0.4
414,441 + PGA1_c04270 0.70 -1.7
414,452 + PGA1_c04270 0.71 +0.1
414,452 + PGA1_c04270 0.71 +0.7
414,452 + PGA1_c04270 0.71 -1.9
414,460 - PGA1_c04270 0.72 +0.7
414,460 - PGA1_c04270 0.72 -0.7
414,460 - PGA1_c04270 0.72 -1.7
414,473 - PGA1_c04270 0.74 -1.5
414,473 - PGA1_c04270 0.74 -1.6
414,488 - PGA1_c04270 0.75 -0.3
414,531 + PGA1_c04270 0.80 +0.9
414,531 + PGA1_c04270 0.80 -0.5
414,544 - PGA1_c04270 0.82 +0.7
414,544 - PGA1_c04270 0.82 -0.7
414,573 - PGA1_c04270 0.85 +0.7
414,576 - PGA1_c04270 0.86 -1.6

Or see this region's nucleotide sequence