Experiment: m.b. Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04090 and PGA1_c04100 are separated by 350 nucleotides PGA1_c04100 and PGA1_c04110 are separated by 278 nucleotides
PGA1_c04090: PGA1_c04090 - beta-ketoadipyl-CoA thiolase PaaJ, at 393,581 to 394,783
_c04090
PGA1_c04100: PGA1_c04100 - sulfatase, at 395,134 to 396,780
_c04100
PGA1_c04110: PGA1_c04110 - putative fatty acid oxidation complex subunit alpha, at 397,059 to 399,152
_c04110
Position (kb) 395
396
397 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 394.143 kb on + strand, within PGA1_c04090 at 394.143 kb on + strand, within PGA1_c04090 at 394.151 kb on - strand, within PGA1_c04090 at 394.153 kb on + strand, within PGA1_c04090 at 394.193 kb on + strand, within PGA1_c04090 at 394.230 kb on - strand, within PGA1_c04090 at 394.262 kb on + strand, within PGA1_c04090 at 394.280 kb on + strand, within PGA1_c04090 at 394.280 kb on + strand, within PGA1_c04090 at 394.361 kb on + strand, within PGA1_c04090 at 394.361 kb on + strand, within PGA1_c04090 at 394.361 kb on + strand, within PGA1_c04090 at 394.369 kb on - strand, within PGA1_c04090 at 394.382 kb on + strand, within PGA1_c04090 at 394.396 kb on - strand, within PGA1_c04090 at 394.417 kb on - strand, within PGA1_c04090 at 394.424 kb on + strand, within PGA1_c04090 at 394.465 kb on + strand, within PGA1_c04090 at 394.548 kb on + strand, within PGA1_c04090 at 394.636 kb on + strand, within PGA1_c04090 at 394.650 kb on - strand, within PGA1_c04090 at 394.650 kb on - strand, within PGA1_c04090 at 394.702 kb on + strand at 394.702 kb on + strand at 394.710 kb on + strand at 394.718 kb on - strand at 394.850 kb on - strand at 394.868 kb on + strand at 394.906 kb on + strand at 394.944 kb on + strand at 394.944 kb on + strand at 394.949 kb on + strand at 394.949 kb on + strand at 394.949 kb on + strand at 394.949 kb on + strand at 394.949 kb on + strand at 394.949 kb on + strand at 394.949 kb on + strand at 394.957 kb on - strand at 394.957 kb on - strand at 394.957 kb on - strand at 395.043 kb on + strand at 395.049 kb on + strand at 395.049 kb on + strand at 395.049 kb on + strand at 395.051 kb on - strand at 395.055 kb on - strand at 395.057 kb on - strand at 395.062 kb on + strand at 395.062 kb on + strand at 395.062 kb on + strand at 395.062 kb on + strand at 395.062 kb on + strand at 395.062 kb on - strand at 395.070 kb on - strand at 395.070 kb on - strand at 395.070 kb on - strand at 395.096 kb on + strand at 395.148 kb on + strand at 395.176 kb on + strand at 395.183 kb on + strand at 395.184 kb on - strand at 395.200 kb on + strand at 395.202 kb on + strand at 395.208 kb on - strand at 395.225 kb on + strand at 395.258 kb on + strand at 395.266 kb on - strand at 395.266 kb on - strand at 395.276 kb on + strand at 395.285 kb on - strand at 395.298 kb on + strand at 395.316 kb on - strand, within PGA1_c04100 at 395.318 kb on + strand, within PGA1_c04100 at 395.345 kb on - strand, within PGA1_c04100 at 395.348 kb on + strand, within PGA1_c04100 at 395.363 kb on - strand, within PGA1_c04100 at 395.365 kb on - strand, within PGA1_c04100 at 395.378 kb on - strand, within PGA1_c04100 at 395.378 kb on - strand, within PGA1_c04100 at 395.388 kb on + strand, within PGA1_c04100 at 395.391 kb on - strand, within PGA1_c04100 at 395.395 kb on + strand, within PGA1_c04100 at 395.395 kb on + strand, within PGA1_c04100 at 395.427 kb on - strand, within PGA1_c04100 at 395.434 kb on - strand, within PGA1_c04100 at 395.449 kb on + strand, within PGA1_c04100 at 395.457 kb on - strand, within PGA1_c04100 at 395.467 kb on - strand, within PGA1_c04100 at 395.467 kb on - strand, within PGA1_c04100 at 395.470 kb on + strand, within PGA1_c04100 at 395.538 kb on + strand, within PGA1_c04100 at 395.546 kb on - strand, within PGA1_c04100 at 395.561 kb on - strand, within PGA1_c04100 at 395.561 kb on - strand, within PGA1_c04100 at 395.577 kb on + strand, within PGA1_c04100 at 395.577 kb on + strand, within PGA1_c04100 at 395.585 kb on - strand, within PGA1_c04100 at 395.605 kb on + strand, within PGA1_c04100 at 395.610 kb on + strand, within PGA1_c04100 at 395.615 kb on + strand, within PGA1_c04100 at 395.628 kb on + strand, within PGA1_c04100 at 395.628 kb on + strand, within PGA1_c04100 at 395.628 kb on + strand, within PGA1_c04100 at 395.636 kb on - strand, within PGA1_c04100 at 395.636 kb on - strand, within PGA1_c04100 at 395.691 kb on + strand, within PGA1_c04100 at 395.708 kb on - strand, within PGA1_c04100 at 395.722 kb on + strand, within PGA1_c04100 at 395.740 kb on - strand, within PGA1_c04100 at 395.799 kb on + strand, within PGA1_c04100 at 395.799 kb on + strand, within PGA1_c04100 at 395.799 kb on + strand, within PGA1_c04100 at 395.799 kb on + strand, within PGA1_c04100 at 395.799 kb on + strand, within PGA1_c04100 at 395.799 kb on + strand, within PGA1_c04100 at 395.799 kb on + strand, within PGA1_c04100 at 395.807 kb on - strand, within PGA1_c04100 at 395.807 kb on - strand, within PGA1_c04100 at 395.807 kb on - strand, within PGA1_c04100 at 395.807 kb on - strand, within PGA1_c04100 at 395.807 kb on - strand, within PGA1_c04100 at 395.807 kb on - strand, within PGA1_c04100 at 395.807 kb on - strand, within PGA1_c04100 at 395.807 kb on - strand, within PGA1_c04100 at 395.807 kb on - strand, within PGA1_c04100 at 395.807 kb on - strand, within PGA1_c04100 at 395.812 kb on + strand, within PGA1_c04100 at 395.846 kb on - strand, within PGA1_c04100 at 395.889 kb on + strand, within PGA1_c04100 at 395.897 kb on - strand, within PGA1_c04100 at 395.904 kb on - strand, within PGA1_c04100 at 395.925 kb on + strand, within PGA1_c04100 at 395.927 kb on - strand, within PGA1_c04100 at 395.933 kb on - strand, within PGA1_c04100 at 395.933 kb on - strand, within PGA1_c04100 at 396.003 kb on + strand, within PGA1_c04100 at 396.022 kb on - strand, within PGA1_c04100 at 396.057 kb on - strand, within PGA1_c04100 at 396.058 kb on - strand, within PGA1_c04100 at 396.064 kb on - strand, within PGA1_c04100 at 396.085 kb on + strand, within PGA1_c04100 at 396.110 kb on + strand, within PGA1_c04100 at 396.110 kb on + strand, within PGA1_c04100 at 396.118 kb on - strand, within PGA1_c04100 at 396.118 kb on - strand, within PGA1_c04100 at 396.298 kb on - strand, within PGA1_c04100 at 396.325 kb on - strand, within PGA1_c04100 at 396.388 kb on + strand, within PGA1_c04100 at 396.388 kb on + strand, within PGA1_c04100 at 396.388 kb on + strand, within PGA1_c04100 at 396.462 kb on + strand, within PGA1_c04100 at 396.550 kb on + strand, within PGA1_c04100 at 396.561 kb on + strand, within PGA1_c04100 at 396.563 kb on - strand, within PGA1_c04100 at 396.563 kb on - strand, within PGA1_c04100 at 396.568 kb on - strand, within PGA1_c04100 at 396.594 kb on - strand, within PGA1_c04100 at 396.600 kb on - strand, within PGA1_c04100 at 396.644 kb on - strand at 396.657 kb on - strand at 396.707 kb on + strand at 396.715 kb on - strand at 396.744 kb on + strand at 396.811 kb on - strand at 397.203 kb on + strand at 397.208 kb on + strand at 397.208 kb on + strand at 397.216 kb on - strand at 397.216 kb on - strand at 397.345 kb on + strand, within PGA1_c04110 at 397.350 kb on + strand, within PGA1_c04110 at 397.353 kb on - strand, within PGA1_c04110 at 397.358 kb on - strand, within PGA1_c04110 at 397.358 kb on - strand, within PGA1_c04110 at 397.362 kb on + strand, within PGA1_c04110 at 397.488 kb on + strand, within PGA1_c04110 at 397.488 kb on + strand, within PGA1_c04110 at 397.500 kb on + strand, within PGA1_c04110 at 397.604 kb on + strand, within PGA1_c04110 at 397.612 kb on - strand, within PGA1_c04110 at 397.613 kb on - strand, within PGA1_c04110 at 397.753 kb on - strand, within PGA1_c04110 at 397.755 kb on + strand, within PGA1_c04110 at 397.755 kb on + strand, within PGA1_c04110 at 397.773 kb on + strand, within PGA1_c04110
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml remove 394,143 + PGA1_c04090 0.47 +0.1 394,143 + PGA1_c04090 0.47 -2.1 394,151 - PGA1_c04090 0.47 -0.8 394,153 + PGA1_c04090 0.48 -2.8 394,193 + PGA1_c04090 0.51 -0.9 394,230 - PGA1_c04090 0.54 -1.3 394,262 + PGA1_c04090 0.57 +0.5 394,280 + PGA1_c04090 0.58 -1.1 394,280 + PGA1_c04090 0.58 -1.4 394,361 + PGA1_c04090 0.65 -0.0 394,361 + PGA1_c04090 0.65 -0.9 394,361 + PGA1_c04090 0.65 +1.1 394,369 - PGA1_c04090 0.66 -1.0 394,382 + PGA1_c04090 0.67 -0.2 394,396 - PGA1_c04090 0.68 +0.0 394,417 - PGA1_c04090 0.69 -0.5 394,424 + PGA1_c04090 0.70 +0.7 394,465 + PGA1_c04090 0.73 +0.2 394,548 + PGA1_c04090 0.80 -0.3 394,636 + PGA1_c04090 0.88 -2.2 394,650 - PGA1_c04090 0.89 -0.8 394,650 - PGA1_c04090 0.89 -0.4 394,702 + -0.0 394,702 + +0.9 394,710 + +0.1 394,718 - +0.0 394,850 - +1.3 394,868 + +0.1 394,906 + +0.7 394,944 + +0.3 394,944 + -0.6 394,949 + -0.8 394,949 + -0.1 394,949 + -0.8 394,949 + -0.9 394,949 + -1.0 394,949 + +0.3 394,949 + +0.9 394,957 - +0.1 394,957 - +1.7 394,957 - -0.4 395,043 + -0.8 395,049 + -1.1 395,049 + -0.6 395,049 + +0.4 395,051 - -1.5 395,055 - +1.1 395,057 - -0.3 395,062 + -1.3 395,062 + +1.8 395,062 + -0.6 395,062 + +0.3 395,062 + +2.2 395,062 - -1.1 395,070 - +0.3 395,070 - +0.7 395,070 - -0.2 395,096 + -0.2 395,148 + +0.1 395,176 + -0.9 395,183 + +0.6 395,184 - +0.1 395,200 + -1.1 395,202 + -1.1 395,208 - -0.0 395,225 + +1.1 395,258 + -0.3 395,266 - +0.5 395,266 - +0.3 395,276 + +1.7 395,285 - +1.3 395,298 + -1.0 395,316 - PGA1_c04100 0.11 -1.9 395,318 + PGA1_c04100 0.11 -2.8 395,345 - PGA1_c04100 0.13 +0.3 395,348 + PGA1_c04100 0.13 +0.7 395,363 - PGA1_c04100 0.14 -0.6 395,365 - PGA1_c04100 0.14 +0.3 395,378 - PGA1_c04100 0.15 +0.2 395,378 - PGA1_c04100 0.15 -0.2 395,388 + PGA1_c04100 0.15 -0.5 395,391 - PGA1_c04100 0.16 -0.3 395,395 + PGA1_c04100 0.16 -2.0 395,395 + PGA1_c04100 0.16 +0.2 395,427 - PGA1_c04100 0.18 -0.9 395,434 - PGA1_c04100 0.18 +1.2 395,449 + PGA1_c04100 0.19 +1.1 395,457 - PGA1_c04100 0.20 -2.0 395,467 - PGA1_c04100 0.20 +1.8 395,467 - PGA1_c04100 0.20 -0.6 395,470 + PGA1_c04100 0.20 -0.6 395,538 + PGA1_c04100 0.25 -0.4 395,546 - PGA1_c04100 0.25 -0.8 395,561 - PGA1_c04100 0.26 -2.5 395,561 - PGA1_c04100 0.26 -0.4 395,577 + PGA1_c04100 0.27 -0.2 395,577 + PGA1_c04100 0.27 -0.7 395,585 - PGA1_c04100 0.27 -1.2 395,605 + PGA1_c04100 0.29 +0.7 395,610 + PGA1_c04100 0.29 -0.4 395,615 + PGA1_c04100 0.29 -0.2 395,628 + PGA1_c04100 0.30 +1.3 395,628 + PGA1_c04100 0.30 -0.9 395,628 + PGA1_c04100 0.30 +0.1 395,636 - PGA1_c04100 0.30 +2.1 395,636 - PGA1_c04100 0.30 +1.0 395,691 + PGA1_c04100 0.34 +0.1 395,708 - PGA1_c04100 0.35 +0.8 395,722 + PGA1_c04100 0.36 -0.3 395,740 - PGA1_c04100 0.37 +0.8 395,799 + PGA1_c04100 0.40 -0.9 395,799 + PGA1_c04100 0.40 -0.6 395,799 + PGA1_c04100 0.40 +1.7 395,799 + PGA1_c04100 0.40 -0.6 395,799 + PGA1_c04100 0.40 -0.5 395,799 + PGA1_c04100 0.40 +0.3 395,799 + PGA1_c04100 0.40 +0.2 395,807 - PGA1_c04100 0.41 -0.2 395,807 - PGA1_c04100 0.41 +0.4 395,807 - PGA1_c04100 0.41 +0.5 395,807 - PGA1_c04100 0.41 +0.4 395,807 - PGA1_c04100 0.41 +0.6 395,807 - PGA1_c04100 0.41 +0.7 395,807 - PGA1_c04100 0.41 -0.1 395,807 - PGA1_c04100 0.41 +0.2 395,807 - PGA1_c04100 0.41 +0.0 395,807 - PGA1_c04100 0.41 -0.0 395,812 + PGA1_c04100 0.41 +0.1 395,846 - PGA1_c04100 0.43 +2.6 395,889 + PGA1_c04100 0.46 +0.1 395,897 - PGA1_c04100 0.46 +0.8 395,904 - PGA1_c04100 0.47 +0.2 395,925 + PGA1_c04100 0.48 -0.6 395,927 - PGA1_c04100 0.48 -0.5 395,933 - PGA1_c04100 0.49 -0.2 395,933 - PGA1_c04100 0.49 -2.3 396,003 + PGA1_c04100 0.53 +1.0 396,022 - PGA1_c04100 0.54 -0.2 396,057 - PGA1_c04100 0.56 -0.6 396,058 - PGA1_c04100 0.56 +0.5 396,064 - PGA1_c04100 0.56 -1.8 396,085 + PGA1_c04100 0.58 +0.6 396,110 + PGA1_c04100 0.59 -0.1 396,110 + PGA1_c04100 0.59 -0.5 396,118 - PGA1_c04100 0.60 -0.0 396,118 - PGA1_c04100 0.60 -0.1 396,298 - PGA1_c04100 0.71 +0.9 396,325 - PGA1_c04100 0.72 +1.7 396,388 + PGA1_c04100 0.76 +0.5 396,388 + PGA1_c04100 0.76 +1.1 396,388 + PGA1_c04100 0.76 -1.0 396,462 + PGA1_c04100 0.81 +0.1 396,550 + PGA1_c04100 0.86 +0.5 396,561 + PGA1_c04100 0.87 -0.8 396,563 - PGA1_c04100 0.87 -0.5 396,563 - PGA1_c04100 0.87 +0.1 396,568 - PGA1_c04100 0.87 -1.5 396,594 - PGA1_c04100 0.89 +0.2 396,600 - PGA1_c04100 0.89 -0.1 396,644 - -0.5 396,657 - -1.3 396,707 + +0.0 396,715 - +0.5 396,744 + +0.2 396,811 - +1.3 397,203 + -1.5 397,208 + -0.9 397,208 + -0.7 397,216 - -2.2 397,216 - +0.3 397,345 + PGA1_c04110 0.14 -1.1 397,350 + PGA1_c04110 0.14 -0.8 397,353 - PGA1_c04110 0.14 -0.6 397,358 - PGA1_c04110 0.14 -0.8 397,358 - PGA1_c04110 0.14 -1.3 397,362 + PGA1_c04110 0.14 +0.1 397,488 + PGA1_c04110 0.20 -1.6 397,488 + PGA1_c04110 0.20 -0.2 397,500 + PGA1_c04110 0.21 -0.9 397,604 + PGA1_c04110 0.26 -0.9 397,612 - PGA1_c04110 0.26 -1.4 397,613 - PGA1_c04110 0.26 -0.2 397,753 - PGA1_c04110 0.33 -1.2 397,755 + PGA1_c04110 0.33 +0.7 397,755 + PGA1_c04110 0.33 +0.5 397,773 + PGA1_c04110 0.34 +0.9
Or see this region's nucleotide sequence