Strain Fitness in Marinobacter adhaerens HP15 around HP15_3770

Experiment: m.b. Fusidic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3768 and HP15_3769 are separated by 16 nucleotidesHP15_3769 and HP15_3770 are separated by 206 nucleotidesHP15_3770 and HP15_3771 are separated by 248 nucleotides HP15_3768: HP15_3768 - conserved hypothetical protein, secreted, at 3,989,869 to 3,990,534 _3768 HP15_3769: HP15_3769 - conserved hypothetical protein, at 3,990,551 to 3,991,201 _3769 HP15_3770: HP15_3770 - MATE efflux family protein, at 3,991,408 to 3,992,736 _3770 HP15_3771: HP15_3771 - membrane protein containing cytochrome c oxidase, subunit II domain, at 3,992,985 to 3,994,064 _3771 Position (kb) 3991 3992 3993Strain fitness (log2 ratio) -2 -1 0 1 2at 3990.410 kb on + strand, within HP15_3768at 3990.431 kb on - strand, within HP15_3768at 3990.547 kb on - strandat 3990.557 kb on - strandat 3990.567 kb on - strandat 3990.820 kb on - strand, within HP15_3769at 3990.965 kb on - strand, within HP15_3769at 3991.070 kb on - strand, within HP15_3769at 3991.086 kb on - strand, within HP15_3769at 3991.103 kb on - strand, within HP15_3769at 3991.137 kb on + strandat 3991.137 kb on + strandat 3991.289 kb on + strandat 3991.307 kb on - strandat 3991.315 kb on - strandat 3991.381 kb on + strandat 3991.395 kb on + strandat 3991.505 kb on - strandat 3991.557 kb on + strand, within HP15_3770at 3991.583 kb on - strand, within HP15_3770at 3991.602 kb on + strand, within HP15_3770at 3991.636 kb on + strand, within HP15_3770at 3991.644 kb on - strand, within HP15_3770at 3991.675 kb on - strand, within HP15_3770at 3991.729 kb on + strand, within HP15_3770at 3991.789 kb on + strand, within HP15_3770at 3991.789 kb on + strand, within HP15_3770at 3991.797 kb on - strand, within HP15_3770at 3991.801 kb on + strand, within HP15_3770at 3991.801 kb on + strand, within HP15_3770at 3991.809 kb on - strand, within HP15_3770at 3991.943 kb on + strand, within HP15_3770at 3991.985 kb on + strand, within HP15_3770at 3991.995 kb on + strand, within HP15_3770at 3992.069 kb on + strand, within HP15_3770at 3992.081 kb on + strand, within HP15_3770at 3992.166 kb on + strand, within HP15_3770at 3992.174 kb on - strand, within HP15_3770at 3992.401 kb on + strand, within HP15_3770at 3992.404 kb on - strand, within HP15_3770at 3992.501 kb on + strand, within HP15_3770at 3992.501 kb on + strand, within HP15_3770at 3992.501 kb on + strand, within HP15_3770at 3992.501 kb on + strand, within HP15_3770at 3992.501 kb on + strand, within HP15_3770at 3992.501 kb on + strand, within HP15_3770at 3992.501 kb on + strand, within HP15_3770at 3992.509 kb on - strand, within HP15_3770at 3992.509 kb on - strand, within HP15_3770at 3992.509 kb on - strand, within HP15_3770at 3992.509 kb on - strand, within HP15_3770at 3992.509 kb on - strand, within HP15_3770at 3992.509 kb on - strand, within HP15_3770at 3992.509 kb on - strand, within HP15_3770at 3992.552 kb on + strand, within HP15_3770at 3992.582 kb on - strand, within HP15_3770at 3992.621 kb on + strandat 3992.661 kb on + strandat 3992.661 kb on + strandat 3992.661 kb on + strandat 3992.687 kb on - strandat 3992.689 kb on + strandat 3992.697 kb on - strandat 3992.697 kb on - strandat 3992.697 kb on - strandat 3992.704 kb on - strandat 3992.823 kb on + strandat 3992.842 kb on - strandat 3992.852 kb on - strandat 3992.866 kb on + strandat 3992.887 kb on - strandat 3992.923 kb on - strandat 3992.979 kb on + strandat 3992.988 kb on - strandat 3993.002 kb on - strandat 3993.028 kb on + strandat 3993.028 kb on + strandat 3993.036 kb on - strandat 3993.036 kb on - strandat 3993.120 kb on + strand, within HP15_3771at 3993.304 kb on - strand, within HP15_3771at 3993.418 kb on - strand, within HP15_3771at 3993.499 kb on + strand, within HP15_3771at 3993.507 kb on - strand, within HP15_3771at 3993.512 kb on - strand, within HP15_3771at 3993.570 kb on + strand, within HP15_3771at 3993.570 kb on + strand, within HP15_3771at 3993.633 kb on + strand, within HP15_3771at 3993.641 kb on - strand, within HP15_3771at 3993.685 kb on + strand, within HP15_3771at 3993.686 kb on + strand, within HP15_3771at 3993.709 kb on - strand, within HP15_3771

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.03 mg/ml
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3,990,410 + HP15_3768 0.81 -0.6
3,990,431 - HP15_3768 0.84 -1.3
3,990,547 - -0.9
3,990,557 - -0.4
3,990,567 - -0.4
3,990,820 - HP15_3769 0.41 -1.6
3,990,965 - HP15_3769 0.64 -0.0
3,991,070 - HP15_3769 0.80 -0.5
3,991,086 - HP15_3769 0.82 -0.3
3,991,103 - HP15_3769 0.85 -0.8
3,991,137 + -0.1
3,991,137 + -0.7
3,991,289 + -1.9
3,991,307 - +0.1
3,991,315 - -0.7
3,991,381 + +0.7
3,991,395 + +1.2
3,991,505 - -0.4
3,991,557 + HP15_3770 0.11 -0.4
3,991,583 - HP15_3770 0.13 -0.3
3,991,602 + HP15_3770 0.15 -0.5
3,991,636 + HP15_3770 0.17 +0.2
3,991,644 - HP15_3770 0.18 -0.3
3,991,675 - HP15_3770 0.20 -0.4
3,991,729 + HP15_3770 0.24 -0.5
3,991,789 + HP15_3770 0.29 -0.2
3,991,789 + HP15_3770 0.29 -0.3
3,991,797 - HP15_3770 0.29 +0.5
3,991,801 + HP15_3770 0.30 -1.6
3,991,801 + HP15_3770 0.30 +1.1
3,991,809 - HP15_3770 0.30 -0.9
3,991,943 + HP15_3770 0.40 -0.9
3,991,985 + HP15_3770 0.43 -0.0
3,991,995 + HP15_3770 0.44 +0.3
3,992,069 + HP15_3770 0.50 -0.6
3,992,081 + HP15_3770 0.51 -0.1
3,992,166 + HP15_3770 0.57 +0.0
3,992,174 - HP15_3770 0.58 -0.6
3,992,401 + HP15_3770 0.75 -0.3
3,992,404 - HP15_3770 0.75 +0.3
3,992,501 + HP15_3770 0.82 -0.4
3,992,501 + HP15_3770 0.82 -0.1
3,992,501 + HP15_3770 0.82 -0.9
3,992,501 + HP15_3770 0.82 +0.5
3,992,501 + HP15_3770 0.82 +0.2
3,992,501 + HP15_3770 0.82 -0.5
3,992,501 + HP15_3770 0.82 -0.2
3,992,509 - HP15_3770 0.83 -0.5
3,992,509 - HP15_3770 0.83 +0.2
3,992,509 - HP15_3770 0.83 -0.5
3,992,509 - HP15_3770 0.83 -0.4
3,992,509 - HP15_3770 0.83 +0.2
3,992,509 - HP15_3770 0.83 -0.3
3,992,509 - HP15_3770 0.83 +0.3
3,992,552 + HP15_3770 0.86 -0.1
3,992,582 - HP15_3770 0.88 -1.5
3,992,621 + -0.4
3,992,661 + +0.3
3,992,661 + -0.5
3,992,661 + +0.0
3,992,687 - +0.3
3,992,689 + +1.9
3,992,697 - +1.3
3,992,697 - -0.6
3,992,697 - -0.8
3,992,704 - +0.1
3,992,823 + -0.6
3,992,842 - +0.7
3,992,852 - -0.3
3,992,866 + -1.1
3,992,887 - +0.4
3,992,923 - -0.2
3,992,979 + -1.6
3,992,988 - +0.3
3,993,002 - +0.1
3,993,028 + -0.2
3,993,028 + +0.3
3,993,036 - -0.1
3,993,036 - -2.6
3,993,120 + HP15_3771 0.12 -0.3
3,993,304 - HP15_3771 0.30 -1.5
3,993,418 - HP15_3771 0.40 +0.4
3,993,499 + HP15_3771 0.48 -0.3
3,993,507 - HP15_3771 0.48 -0.9
3,993,512 - HP15_3771 0.49 -1.2
3,993,570 + HP15_3771 0.54 -0.9
3,993,570 + HP15_3771 0.54 -0.9
3,993,633 + HP15_3771 0.60 -0.1
3,993,641 - HP15_3771 0.61 -0.2
3,993,685 + HP15_3771 0.65 -0.9
3,993,686 + HP15_3771 0.65 -0.7
3,993,709 - HP15_3771 0.67 -0.2

Or see this region's nucleotide sequence