Experiment: m.b. Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03510 and PGA1_c03520 overlap by 4 nucleotides PGA1_c03520 and PGA1_c03530 overlap by 23 nucleotides PGA1_c03530 and PGA1_c03540 are separated by 78 nucleotides PGA1_c03540 and PGA1_c03550 are separated by 120 nucleotides
PGA1_c03510: PGA1_c03510 - protein insertion permease FtsX-like protein, at 338,667 to 339,566
_c03510
PGA1_c03520: PGA1_c03520 - putative acyltransferase, at 339,563 to 340,312
_c03520
PGA1_c03530: PGA1_c03530 - pyridoxamine 5'-phosphate oxidase-like protein, at 340,290 to 340,895
_c03530
PGA1_c03540: PGA1_c03540 - conserved hypothetical protein, at 340,974 to 341,288
_c03540
PGA1_c03550: PGA1_c03550 - dihydrolipoyl dehydrogenase 2, at 341,409 to 342,806
_c03550
Position (kb) 340
341 Strain fitness (log2 ratio) -2
-1
0
1 at 339.332 kb on - strand, within PGA1_c03510 at 339.339 kb on - strand, within PGA1_c03510 at 339.362 kb on + strand, within PGA1_c03510 at 339.375 kb on - strand, within PGA1_c03510 at 339.387 kb on - strand, within PGA1_c03510 at 339.395 kb on + strand, within PGA1_c03510 at 339.485 kb on + strand at 340.279 kb on - strand at 340.336 kb on + strand at 340.344 kb on - strand at 340.355 kb on + strand, within PGA1_c03530 at 340.363 kb on - strand, within PGA1_c03530 at 340.432 kb on - strand, within PGA1_c03530 at 340.437 kb on - strand, within PGA1_c03530 at 340.504 kb on + strand, within PGA1_c03530 at 340.504 kb on + strand, within PGA1_c03530 at 340.504 kb on + strand, within PGA1_c03530 at 340.512 kb on - strand, within PGA1_c03530 at 340.512 kb on - strand, within PGA1_c03530 at 340.512 kb on - strand, within PGA1_c03530 at 340.648 kb on + strand, within PGA1_c03530 at 340.665 kb on + strand, within PGA1_c03530 at 340.755 kb on + strand, within PGA1_c03530 at 340.798 kb on + strand, within PGA1_c03530 at 340.831 kb on + strand, within PGA1_c03530 at 340.896 kb on + strand at 340.897 kb on + strand at 340.899 kb on - strand at 340.902 kb on + strand at 340.930 kb on + strand at 340.936 kb on - strand at 340.956 kb on + strand at 340.956 kb on + strand at 340.980 kb on + strand at 340.988 kb on - strand at 340.988 kb on - strand at 340.989 kb on - strand at 341.076 kb on - strand, within PGA1_c03540 at 341.162 kb on + strand, within PGA1_c03540 at 341.168 kb on - strand, within PGA1_c03540 at 341.170 kb on + strand, within PGA1_c03540 at 341.170 kb on - strand, within PGA1_c03540 at 341.257 kb on - strand at 341.268 kb on - strand at 341.268 kb on - strand at 341.270 kb on + strand at 341.278 kb on - strand at 341.278 kb on - strand at 341.278 kb on - strand at 341.320 kb on + strand at 341.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml remove 339,332 - PGA1_c03510 0.74 +0.2 339,339 - PGA1_c03510 0.75 +0.2 339,362 + PGA1_c03510 0.77 -0.7 339,375 - PGA1_c03510 0.79 +0.2 339,387 - PGA1_c03510 0.80 +0.4 339,395 + PGA1_c03510 0.81 -2.3 339,485 + -1.1 340,279 - -1.2 340,336 + +1.7 340,344 - +0.3 340,355 + PGA1_c03530 0.11 -1.2 340,363 - PGA1_c03530 0.12 +0.7 340,432 - PGA1_c03530 0.23 -0.6 340,437 - PGA1_c03530 0.24 +1.2 340,504 + PGA1_c03530 0.35 +0.2 340,504 + PGA1_c03530 0.35 +0.7 340,504 + PGA1_c03530 0.35 -0.1 340,512 - PGA1_c03530 0.37 +0.3 340,512 - PGA1_c03530 0.37 -0.3 340,512 - PGA1_c03530 0.37 -0.9 340,648 + PGA1_c03530 0.59 -1.2 340,665 + PGA1_c03530 0.62 +0.2 340,755 + PGA1_c03530 0.77 +1.3 340,798 + PGA1_c03530 0.84 -1.6 340,831 + PGA1_c03530 0.89 -1.3 340,896 + -1.6 340,897 + -0.3 340,899 - -0.3 340,902 + -0.3 340,930 + +1.7 340,936 - +0.0 340,956 + -1.3 340,956 + +1.0 340,980 + -0.6 340,988 - +0.2 340,988 - -0.3 340,989 - -0.3 341,076 - PGA1_c03540 0.32 +0.5 341,162 + PGA1_c03540 0.60 +1.3 341,168 - PGA1_c03540 0.62 +0.2 341,170 + PGA1_c03540 0.62 -1.4 341,170 - PGA1_c03540 0.62 -0.8 341,257 - +0.7 341,268 - -0.6 341,268 - -2.4 341,270 + -0.6 341,278 - +0.2 341,278 - -1.3 341,278 - -0.2 341,320 + -0.8 341,329 - -0.8
Or see this region's nucleotide sequence