Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32750

Experiment: m.b. Spectinomycin 0.00625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c32740 and PGA1_c32750 are separated by 78 nucleotidesPGA1_c32750 and PGA1_c32760 overlap by 4 nucleotides PGA1_c32740: PGA1_c32740 - DNA mismatch repair protein MutL, at 3,431,818 to 3,433,770 _c32740 PGA1_c32750: PGA1_c32750 - manganese transport system membrane protein MntD, at 3,433,849 to 3,434,778 _c32750 PGA1_c32760: PGA1_c32760 - manganese transport system membrane protein MntC, at 3,434,775 to 3,435,980 _c32760 Position (kb) 3433 3434 3435Strain fitness (log2 ratio) -1 0 1at 3433.004 kb on - strand, within PGA1_c32740at 3433.014 kb on + strand, within PGA1_c32740at 3433.014 kb on + strand, within PGA1_c32740at 3433.117 kb on + strand, within PGA1_c32740at 3433.147 kb on + strand, within PGA1_c32740at 3433.149 kb on + strand, within PGA1_c32740at 3433.176 kb on + strand, within PGA1_c32740at 3433.176 kb on + strand, within PGA1_c32740at 3433.211 kb on + strand, within PGA1_c32740at 3433.246 kb on - strand, within PGA1_c32740at 3433.255 kb on - strand, within PGA1_c32740at 3433.291 kb on - strand, within PGA1_c32740at 3433.311 kb on - strand, within PGA1_c32740at 3433.351 kb on - strand, within PGA1_c32740at 3433.377 kb on - strand, within PGA1_c32740at 3433.416 kb on - strand, within PGA1_c32740at 3433.425 kb on + strand, within PGA1_c32740at 3433.425 kb on + strand, within PGA1_c32740at 3433.435 kb on + strand, within PGA1_c32740at 3433.440 kb on + strand, within PGA1_c32740at 3433.440 kb on + strand, within PGA1_c32740at 3433.455 kb on + strand, within PGA1_c32740at 3433.569 kb on + strand, within PGA1_c32740at 3433.583 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml
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3,433,004 - PGA1_c32740 0.61 -0.9
3,433,014 + PGA1_c32740 0.61 -1.5
3,433,014 + PGA1_c32740 0.61 +1.1
3,433,117 + PGA1_c32740 0.67 +0.1
3,433,147 + PGA1_c32740 0.68 -0.3
3,433,149 + PGA1_c32740 0.68 -1.3
3,433,176 + PGA1_c32740 0.70 -1.2
3,433,176 + PGA1_c32740 0.70 +1.7
3,433,211 + PGA1_c32740 0.71 -0.5
3,433,246 - PGA1_c32740 0.73 -0.6
3,433,255 - PGA1_c32740 0.74 +0.6
3,433,291 - PGA1_c32740 0.75 -0.4
3,433,311 - PGA1_c32740 0.76 -0.4
3,433,351 - PGA1_c32740 0.78 -0.8
3,433,377 - PGA1_c32740 0.80 -0.3
3,433,416 - PGA1_c32740 0.82 -0.9
3,433,425 + PGA1_c32740 0.82 +0.7
3,433,425 + PGA1_c32740 0.82 +1.2
3,433,435 + PGA1_c32740 0.83 +0.5
3,433,440 + PGA1_c32740 0.83 -0.1
3,433,440 + PGA1_c32740 0.83 +0.4
3,433,455 + PGA1_c32740 0.84 -0.3
3,433,569 + PGA1_c32740 0.90 -0.5
3,433,583 - +0.7

Or see this region's nucleotide sequence