Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27040

Experiment: m.b. Spectinomycin 0.00625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Spectinomycin 0.00625 mg/ml
2,817,919	-		PGA1_c27020	0.58	+1.6
2,818,005	+		PGA1_c27020	0.79	+0.6
2,818,064	+				+0.0
2,818,064	+				+0.0
2,818,072	-				-0.4
2,818,081	+				+3.0
2,818,089	-				+0.8
2,818,089	-				+0.6
2,818,103	-				+1.6
2,818,135	-				-1.4
2,818,137	+				-1.2
2,818,145	-				+0.0
2,818,145	-				-0.4
2,818,147	+				-1.2
2,818,155	-				+0.6
2,818,155	-				-0.4
2,818,212	-		PGA1_c27030	0.17	-1.0
2,818,217	+		PGA1_c27030	0.18	+1.6
2,818,260	-		PGA1_c27030	0.24	+0.6
2,818,331	-		PGA1_c27030	0.33	+0.5
2,818,331	-		PGA1_c27030	0.33	-0.8
2,818,336	-		PGA1_c27030	0.34	+0.0
2,818,336	-		PGA1_c27030	0.34	+1.0
2,818,532	+		PGA1_c27030	0.61	-0.7
2,818,540	-		PGA1_c27030	0.62	+1.6
2,818,558	-		PGA1_c27030	0.64	+1.6
2,818,558	-		PGA1_c27030	0.64	-1.4
2,818,600	-		PGA1_c27030	0.70	-1.4
2,818,608	-		PGA1_c27030	0.71	-1.2
2,818,625	+		PGA1_c27030	0.73	-0.5
2,818,635	+		PGA1_c27030	0.75	-1.7
2,818,777	+				+1.6
2,818,777	+				+0.0
2,818,785	-				+1.6
2,818,807	-				+1.6
2,818,818	+				-0.7
2,818,826	-				-0.7
2,818,834	+				+1.6
2,818,842	-				+1.6
2,818,842	-				+0.3
2,818,842	-				+1.6
2,818,853	-				+0.6
2,818,855	+				+0.2
2,818,938	+				-2.4
2,818,941	-				+1.6
2,818,941	-				+1.6
2,818,944	+				+0.4
2,818,944	+				-0.1
2,818,944	+				-0.4
2,818,949	+				+0.0
2,819,052	+		PGA1_c27040	0.16	-1.0
2,819,079	+		PGA1_c27040	0.19	+1.0
2,819,087	+		PGA1_c27040	0.20	-0.8
2,819,130	+		PGA1_c27040	0.24	-2.2
2,819,181	-		PGA1_c27040	0.29	-0.7
2,819,226	+		PGA1_c27040	0.33	-1.2
2,819,229	-		PGA1_c27040	0.34	+1.6
2,819,248	-		PGA1_c27040	0.35	+0.3
2,819,252	+		PGA1_c27040	0.36	+0.6
2,819,269	-		PGA1_c27040	0.37	-0.4
2,819,288	-		PGA1_c27040	0.39	-1.4
2,819,449	+		PGA1_c27040	0.55	+2.2
2,819,455	-		PGA1_c27040	0.56	+0.6
2,819,485	+		PGA1_c27040	0.59	+0.3
2,819,490	+		PGA1_c27040	0.59	-0.4
2,819,493	-		PGA1_c27040	0.59	+1.6
2,819,493	-		PGA1_c27040	0.59	+0.3
2,819,495	+		PGA1_c27040	0.60	-0.7
2,819,503	-		PGA1_c27040	0.60	+0.6
2,819,531	+		PGA1_c27040	0.63	-0.4
2,819,551	+		PGA1_c27040	0.65	-0.4
2,819,551	+		PGA1_c27040	0.65	-0.4
2,819,559	-		PGA1_c27040	0.66	+0.6
2,819,600	-		PGA1_c27040	0.70	-1.0
2,819,633	-		PGA1_c27040	0.73	-0.4
2,819,741	-		PGA1_c27040	0.84	+0.4
2,819,799	-		PGA1_c27040	0.89	+1.0
2,819,859	+				+0.7
2,820,066	+				-1.4
2,820,085	+				-1.0
2,820,112	-		PGA1_c27050	0.11	-0.5
2,820,114	+		PGA1_c27050	0.11	+1.6
2,820,149	-		PGA1_c27050	0.13	+1.6
2,820,298	+		PGA1_c27050	0.23	+0.7
2,820,298	+		PGA1_c27050	0.23	+0.9
2,820,306	-		PGA1_c27050	0.23	+0.6
2,820,306	-		PGA1_c27050	0.23	+0.9
2,820,306	-		PGA1_c27050	0.23	-1.2
2,820,306	-		PGA1_c27050	0.23	-0.2
2,820,306	-		PGA1_c27050	0.23	-0.2
2,820,306	-		PGA1_c27050	0.23	+0.0
2,820,368	+		PGA1_c27050	0.28	+1.1
2,820,403	+		PGA1_c27050	0.30	-0.1
2,820,411	-		PGA1_c27050	0.30	-1.0
2,820,418	+		PGA1_c27050	0.31	-0.4
2,820,426	-		PGA1_c27050	0.31	-1.4
2,820,432	-		PGA1_c27050	0.32	-0.4
2,820,542	+		PGA1_c27050	0.39	+0.6
2,820,594	-		PGA1_c27050	0.42	+1.6
2,820,594	-		PGA1_c27050	0.42	+1.6
2,820,603	+		PGA1_c27050	0.43	+0.6
2,820,611	-		PGA1_c27050	0.44	-0.4
2,820,642	+		PGA1_c27050	0.46	-0.0
2,820,645	-		PGA1_c27050	0.46	-1.2
2,820,655	-		PGA1_c27050	0.46	+1.6
2,820,660	-		PGA1_c27050	0.47	-1.5
2,820,669	+		PGA1_c27050	0.47	+0.0
2,820,804	-		PGA1_c27050	0.56	+0.6