Experiment: m.b. Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24920 and PGA1_c24930 are separated by 78 nucleotides PGA1_c24930 and PGA1_c24940 are separated by 169 nucleotides PGA1_c24940 and PGA1_c24950 are separated by 200 nucleotides
PGA1_c24920: PGA1_c24920 - 60 kDa chaperonin, at 2,595,815 to 2,597,467
_c24920
PGA1_c24930: PGA1_c24930 - chaperonin GroS, at 2,597,546 to 2,597,833
_c24930
PGA1_c24940: PGA1_c24940 - Uncharacterized conserved protein, at 2,598,003 to 2,598,713
_c24940
PGA1_c24950: PGA1_c24950 - putative manganese-dependent inorganic pyrophosphatase, at 2,598,914 to 2,599,834
_c24950
Position (kb)
2598
2599 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2597.952 kb on + strand at 2597.960 kb on - strand at 2598.009 kb on - strand at 2598.009 kb on - strand at 2598.014 kb on - strand at 2598.014 kb on - strand at 2598.014 kb on - strand at 2598.050 kb on + strand at 2598.057 kb on + strand at 2598.067 kb on + strand at 2598.072 kb on + strand at 2598.077 kb on + strand, within PGA1_c24940 at 2598.080 kb on - strand, within PGA1_c24940 at 2598.087 kb on + strand, within PGA1_c24940 at 2598.127 kb on - strand, within PGA1_c24940 at 2598.189 kb on + strand, within PGA1_c24940 at 2598.240 kb on + strand, within PGA1_c24940 at 2598.248 kb on - strand, within PGA1_c24940 at 2598.248 kb on - strand, within PGA1_c24940 at 2598.261 kb on + strand, within PGA1_c24940 at 2598.261 kb on + strand, within PGA1_c24940 at 2598.332 kb on + strand, within PGA1_c24940 at 2598.363 kb on - strand, within PGA1_c24940 at 2598.365 kb on + strand, within PGA1_c24940 at 2598.373 kb on - strand, within PGA1_c24940 at 2598.384 kb on + strand, within PGA1_c24940 at 2598.387 kb on + strand, within PGA1_c24940 at 2598.389 kb on + strand, within PGA1_c24940 at 2598.493 kb on + strand, within PGA1_c24940 at 2598.508 kb on + strand, within PGA1_c24940 at 2598.516 kb on - strand, within PGA1_c24940 at 2598.516 kb on - strand, within PGA1_c24940 at 2598.516 kb on - strand, within PGA1_c24940 at 2598.530 kb on - strand, within PGA1_c24940 at 2598.556 kb on - strand, within PGA1_c24940 at 2598.620 kb on + strand, within PGA1_c24940 at 2598.652 kb on + strand at 2598.652 kb on + strand at 2598.652 kb on + strand at 2598.660 kb on - strand at 2598.660 kb on - strand at 2598.660 kb on - strand at 2598.660 kb on - strand at 2598.660 kb on - strand at 2598.672 kb on - strand at 2598.708 kb on + strand at 2598.777 kb on + strand at 2598.784 kb on - strand at 2598.814 kb on + strand at 2598.814 kb on + strand at 2598.850 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml remove 2,597,952 + +0.7 2,597,960 - -2.0 2,598,009 - +0.2 2,598,009 - -0.5 2,598,014 - -1.3 2,598,014 - +0.3 2,598,014 - -1.8 2,598,050 + -0.4 2,598,057 + -0.8 2,598,067 + +0.5 2,598,072 + -0.5 2,598,077 + PGA1_c24940 0.10 +1.3 2,598,080 - PGA1_c24940 0.11 -0.2 2,598,087 + PGA1_c24940 0.12 -0.2 2,598,127 - PGA1_c24940 0.17 -1.9 2,598,189 + PGA1_c24940 0.26 -0.3 2,598,240 + PGA1_c24940 0.33 +1.1 2,598,248 - PGA1_c24940 0.34 +1.1 2,598,248 - PGA1_c24940 0.34 -0.3 2,598,261 + PGA1_c24940 0.36 -0.6 2,598,261 + PGA1_c24940 0.36 -2.2 2,598,332 + PGA1_c24940 0.46 +0.4 2,598,363 - PGA1_c24940 0.51 -0.8 2,598,365 + PGA1_c24940 0.51 +0.5 2,598,373 - PGA1_c24940 0.52 -1.3 2,598,384 + PGA1_c24940 0.54 +1.5 2,598,387 + PGA1_c24940 0.54 -0.9 2,598,389 + PGA1_c24940 0.54 -0.7 2,598,493 + PGA1_c24940 0.69 +2.4 2,598,508 + PGA1_c24940 0.71 -0.7 2,598,516 - PGA1_c24940 0.72 -1.1 2,598,516 - PGA1_c24940 0.72 +0.1 2,598,516 - PGA1_c24940 0.72 +0.5 2,598,530 - PGA1_c24940 0.74 +0.4 2,598,556 - PGA1_c24940 0.78 +1.0 2,598,620 + PGA1_c24940 0.87 +0.1 2,598,652 + -0.2 2,598,652 + +0.8 2,598,652 + -0.0 2,598,660 - +0.1 2,598,660 - -1.6 2,598,660 - +0.1 2,598,660 - +0.9 2,598,660 - +0.3 2,598,672 - -1.3 2,598,708 + +0.1 2,598,777 + +0.2 2,598,784 - -0.0 2,598,814 + -0.2 2,598,814 + -1.8 2,598,850 + -0.7
Or see this region's nucleotide sequence