Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02080

Experiment: m.b. Spectinomycin 0.00625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02060 and PGA1_c02070 are separated by 89 nucleotidesPGA1_c02070 and PGA1_c02080 overlap by 1 nucleotidesPGA1_c02080 and PGA1_c02090 overlap by 4 nucleotides PGA1_c02060: PGA1_c02060 - short-chain dehydrogenase / reductase, at 188,434 to 189,162 _c02060 PGA1_c02070: PGA1_c02070 - putative GTP binding protein EngB, at 189,252 to 189,902 _c02070 PGA1_c02080: PGA1_c02080 - Uncharacterized Fe-S protein, at 189,902 to 190,654 _c02080 PGA1_c02090: PGA1_c02090 - inner membrane protein OxaA, at 190,651 to 192,468 _c02090 Position (kb) 189 190 191Strain fitness (log2 ratio) -1 0 1 2at 188.920 kb on + strand, within PGA1_c02060at 188.999 kb on - strand, within PGA1_c02060at 188.999 kb on - strand, within PGA1_c02060at 189.048 kb on + strand, within PGA1_c02060at 189.111 kb on - strandat 189.154 kb on - strandat 189.168 kb on + strandat 189.238 kb on + strandat 189.246 kb on - strandat 189.251 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml
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188,920 + PGA1_c02060 0.67 +1.0
188,999 - PGA1_c02060 0.78 -0.2
188,999 - PGA1_c02060 0.78 +0.6
189,048 + PGA1_c02060 0.84 -1.7
189,111 - -1.4
189,154 - +2.1
189,168 + -0.2
189,238 + -1.0
189,246 - +0.2
189,251 - -0.7

Or see this region's nucleotide sequence