Experiment: m.b. Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16740 and PGA1_c16750 are separated by 236 nucleotides PGA1_c16750 and PGA1_c16760 are separated by 213 nucleotides
PGA1_c16740: PGA1_c16740 - diguanylate cyclase domain-containing transport protein, at 1,742,985 to 1,745,828
_c16740
PGA1_c16750: PGA1_c16750 - putative MFS-type transporter, at 1,746,065 to 1,747,234
_c16750
PGA1_c16760: PGA1_c16760 - vitamin B12-dependent ribonucleotide reductase NrdJ, at 1,747,448 to 1,751,092
_c16760
Position (kb)
1746
1747
1748 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1745.106 kb on + strand, within PGA1_c16740 at 1745.265 kb on + strand, within PGA1_c16740 at 1745.273 kb on + strand, within PGA1_c16740 at 1745.290 kb on + strand, within PGA1_c16740 at 1745.351 kb on - strand, within PGA1_c16740 at 1745.433 kb on - strand, within PGA1_c16740 at 1745.520 kb on + strand, within PGA1_c16740 at 1745.568 kb on - strand at 1745.590 kb on - strand at 1745.624 kb on + strand at 1745.664 kb on + strand at 1745.788 kb on - strand at 1745.809 kb on - strand at 1745.826 kb on + strand at 1745.853 kb on + strand at 1745.863 kb on - strand at 1745.942 kb on - strand at 1745.990 kb on - strand at 1746.057 kb on + strand at 1746.086 kb on - strand at 1746.086 kb on - strand at 1746.091 kb on - strand at 1746.109 kb on + strand at 1746.115 kb on + strand at 1746.230 kb on - strand, within PGA1_c16750 at 1746.356 kb on - strand, within PGA1_c16750 at 1746.360 kb on - strand, within PGA1_c16750 at 1746.431 kb on - strand, within PGA1_c16750 at 1746.434 kb on - strand, within PGA1_c16750 at 1746.645 kb on - strand, within PGA1_c16750 at 1746.683 kb on + strand, within PGA1_c16750 at 1746.803 kb on - strand, within PGA1_c16750 at 1746.894 kb on - strand, within PGA1_c16750 at 1747.005 kb on + strand, within PGA1_c16750 at 1747.013 kb on - strand, within PGA1_c16750 at 1747.030 kb on - strand, within PGA1_c16750 at 1747.346 kb on - strand at 1747.350 kb on + strand at 1747.358 kb on - strand at 1747.584 kb on - strand at 1747.924 kb on - strand, within PGA1_c16760 at 1747.960 kb on - strand, within PGA1_c16760 at 1747.960 kb on - strand, within PGA1_c16760 at 1747.960 kb on - strand, within PGA1_c16760 at 1748.014 kb on - strand, within PGA1_c16760 at 1748.032 kb on + strand, within PGA1_c16760 at 1748.149 kb on + strand, within PGA1_c16760 at 1748.183 kb on + strand, within PGA1_c16760 at 1748.190 kb on - strand, within PGA1_c16760 at 1748.191 kb on - strand, within PGA1_c16760 at 1748.198 kb on + strand, within PGA1_c16760
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml remove 1,745,106 + PGA1_c16740 0.75 +0.9 1,745,265 + PGA1_c16740 0.80 -2.3 1,745,273 + PGA1_c16740 0.80 +0.0 1,745,290 + PGA1_c16740 0.81 -0.3 1,745,351 - PGA1_c16740 0.83 -0.2 1,745,433 - PGA1_c16740 0.86 -0.1 1,745,520 + PGA1_c16740 0.89 +0.1 1,745,568 - -0.5 1,745,590 - +1.1 1,745,624 + -1.3 1,745,664 + +0.5 1,745,788 - -0.3 1,745,809 - +0.7 1,745,826 + -0.3 1,745,853 + +1.5 1,745,863 - +0.9 1,745,942 - +0.5 1,745,990 - +0.2 1,746,057 + +1.5 1,746,086 - +3.8 1,746,086 - +0.0 1,746,091 - -1.0 1,746,109 + -0.1 1,746,115 + +0.4 1,746,230 - PGA1_c16750 0.14 -1.5 1,746,356 - PGA1_c16750 0.25 +0.5 1,746,360 - PGA1_c16750 0.25 +0.7 1,746,431 - PGA1_c16750 0.31 +0.2 1,746,434 - PGA1_c16750 0.32 +0.5 1,746,645 - PGA1_c16750 0.50 -0.1 1,746,683 + PGA1_c16750 0.53 -0.1 1,746,803 - PGA1_c16750 0.63 -0.1 1,746,894 - PGA1_c16750 0.71 -0.5 1,747,005 + PGA1_c16750 0.80 -0.7 1,747,013 - PGA1_c16750 0.81 -1.3 1,747,030 - PGA1_c16750 0.82 -0.1 1,747,346 - +0.2 1,747,350 + -0.6 1,747,358 - +0.5 1,747,584 - +0.7 1,747,924 - PGA1_c16760 0.13 -3.2 1,747,960 - PGA1_c16760 0.14 -2.0 1,747,960 - PGA1_c16760 0.14 -0.5 1,747,960 - PGA1_c16760 0.14 -0.1 1,748,014 - PGA1_c16760 0.16 -0.8 1,748,032 + PGA1_c16760 0.16 +0.5 1,748,149 + PGA1_c16760 0.19 +0.5 1,748,183 + PGA1_c16760 0.20 -1.5 1,748,190 - PGA1_c16760 0.20 -0.8 1,748,191 - PGA1_c16760 0.20 -0.1 1,748,198 + PGA1_c16760 0.21 +0.2
Or see this region's nucleotide sequence