Experiment: m.b. Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14350 and PGA1_c14360 are separated by 125 nucleotides PGA1_c14360 and PGA1_c14370 are separated by 139 nucleotides PGA1_c14370 and PGA1_c14380 overlap by 4 nucleotides
PGA1_c14350: PGA1_c14350 - Protein of unknown function (DUF1153)., at 1,490,168 to 1,490,446
_c14350
PGA1_c14360: PGA1_c14360 - cell cycle response regulator, at 1,490,572 to 1,491,291
_c14360
PGA1_c14370: PGA1_c14370 - DNA ligase LigA, at 1,491,431 to 1,493,689
_c14370
PGA1_c14380: PGA1_c14380 - ATP-dependent DNA helicase RecG, at 1,493,686 to 1,495,776
_c14380
Position (kb) 1491
1492
1493
1494 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.464 kb on + strand at 1490.466 kb on + strand at 1490.466 kb on + strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.472 kb on - strand at 1490.474 kb on - strand at 1490.526 kb on + strand at 1490.526 kb on + strand at 1490.540 kb on + strand at 1490.542 kb on + strand at 1490.542 kb on + strand at 1490.548 kb on - strand at 1490.550 kb on + strand at 1490.550 kb on + strand at 1490.550 kb on + strand at 1490.550 kb on + strand at 1490.550 kb on + strand at 1490.550 kb on + strand at 1490.550 kb on + strand at 1490.550 kb on + strand at 1490.550 kb on + strand at 1490.550 kb on + strand at 1490.550 kb on + strand at 1490.550 kb on - strand at 1490.555 kb on - strand at 1490.558 kb on - strand at 1490.558 kb on - strand at 1490.558 kb on - strand at 1490.558 kb on - strand at 1490.558 kb on - strand at 1490.558 kb on - strand at 1490.558 kb on - strand at 1490.558 kb on - strand at 1490.558 kb on - strand at 1490.592 kb on + strand at 1490.608 kb on + strand at 1490.613 kb on - strand at 1490.615 kb on + strand at 1490.615 kb on + strand at 1490.623 kb on - strand at 1490.623 kb on - strand at 1490.623 kb on - strand at 1490.623 kb on - strand at 1490.628 kb on - strand at 1490.629 kb on - strand at 1490.629 kb on - strand at 1490.643 kb on + strand at 1490.643 kb on + strand at 1490.643 kb on + strand at 1490.643 kb on + strand at 1490.643 kb on + strand at 1490.643 kb on + strand at 1490.643 kb on + strand at 1490.643 kb on + strand at 1490.649 kb on - strand, within PGA1_c14360 at 1490.651 kb on - strand, within PGA1_c14360 at 1490.723 kb on + strand, within PGA1_c14360 at 1490.723 kb on + strand, within PGA1_c14360 at 1490.730 kb on - strand, within PGA1_c14360 at 1490.731 kb on - strand, within PGA1_c14360 at 1490.731 kb on - strand, within PGA1_c14360 at 1490.731 kb on - strand, within PGA1_c14360 at 1490.731 kb on - strand, within PGA1_c14360 at 1490.747 kb on + strand, within PGA1_c14360 at 1490.755 kb on - strand, within PGA1_c14360 at 1490.805 kb on + strand, within PGA1_c14360 at 1490.818 kb on - strand, within PGA1_c14360 at 1490.868 kb on + strand, within PGA1_c14360 at 1490.876 kb on - strand, within PGA1_c14360 at 1490.893 kb on + strand, within PGA1_c14360 at 1490.913 kb on - strand, within PGA1_c14360 at 1490.924 kb on + strand, within PGA1_c14360 at 1490.957 kb on - strand, within PGA1_c14360 at 1490.967 kb on - strand, within PGA1_c14360 at 1490.977 kb on - strand, within PGA1_c14360 at 1490.998 kb on - strand, within PGA1_c14360 at 1490.998 kb on - strand, within PGA1_c14360 at 1491.011 kb on + strand, within PGA1_c14360 at 1491.071 kb on - strand, within PGA1_c14360 at 1491.153 kb on - strand, within PGA1_c14360 at 1491.177 kb on - strand, within PGA1_c14360 at 1491.190 kb on + strand, within PGA1_c14360 at 1491.284 kb on - strand at 1491.285 kb on + strand at 1491.293 kb on - strand at 1491.294 kb on - strand at 1491.400 kb on + strand at 1491.421 kb on + strand at 1491.422 kb on + strand at 1491.429 kb on + strand at 1493.869 kb on - strand at 1493.897 kb on - strand, within PGA1_c14380 at 1493.915 kb on - strand, within PGA1_c14380 at 1493.922 kb on + strand, within PGA1_c14380 at 1493.942 kb on + strand, within PGA1_c14380 at 1494.043 kb on + strand, within PGA1_c14380 at 1494.053 kb on + strand, within PGA1_c14380 at 1494.111 kb on + strand, within PGA1_c14380 at 1494.191 kb on - strand, within PGA1_c14380 at 1494.275 kb on + strand, within PGA1_c14380 at 1494.362 kb on - strand, within PGA1_c14380 at 1494.367 kb on - strand, within PGA1_c14380 at 1494.524 kb on + strand, within PGA1_c14380 at 1494.548 kb on - strand, within PGA1_c14380
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml remove 1,490,464 + +0.4 1,490,464 + +1.4 1,490,464 + -0.2 1,490,464 + -0.2 1,490,464 + -0.6 1,490,464 + -0.6 1,490,464 + +0.4 1,490,464 + +0.4 1,490,464 + +0.4 1,490,464 + -0.6 1,490,464 + -1.2 1,490,464 + +0.4 1,490,464 + +0.4 1,490,464 + -0.9 1,490,464 + -1.0 1,490,464 + -1.2 1,490,464 + +2.4 1,490,464 + +0.4 1,490,464 + +0.4 1,490,464 + +0.1 1,490,464 + -0.2 1,490,464 + -2.4 1,490,464 + +0.8 1,490,464 + -0.6 1,490,464 + -0.6 1,490,464 + +1.4 1,490,464 + -0.9 1,490,464 + -2.0 1,490,464 + +0.3 1,490,464 + +2.0 1,490,464 + +1.4 1,490,464 + +1.2 1,490,464 + -0.4 1,490,464 + +0.4 1,490,464 + +0.1 1,490,464 + +0.4 1,490,464 + +1.4 1,490,464 + -0.6 1,490,464 + +0.4 1,490,464 + +0.4 1,490,464 + -1.7 1,490,464 + +0.1 1,490,464 + -0.9 1,490,464 + +1.4 1,490,464 + +0.4 1,490,464 + -1.5 1,490,464 + -2.4 1,490,464 + +0.7 1,490,464 + -0.2 1,490,464 + -1.9 1,490,464 + +1.7 1,490,464 + +1.4 1,490,464 + -0.5 1,490,464 + +0.4 1,490,464 + -1.6 1,490,464 + -0.2 1,490,464 + +0.1 1,490,464 + -0.2 1,490,464 + +0.8 1,490,464 + -0.7 1,490,464 + -1.6 1,490,464 + -0.4 1,490,464 + -0.6 1,490,464 + +0.4 1,490,464 + +0.8 1,490,464 + -0.2 1,490,464 + -0.9 1,490,464 + -0.9 1,490,464 + +0.8 1,490,464 + -0.2 1,490,464 + -1.9 1,490,464 + +1.4 1,490,464 + -0.6 1,490,464 + +0.1 1,490,464 + +0.4 1,490,464 + -0.6 1,490,464 + +1.4 1,490,464 + -0.2 1,490,464 + -1.0 1,490,464 + -0.2 1,490,464 + +1.4 1,490,464 + -1.6 1,490,464 + -1.4 1,490,464 + -1.1 1,490,464 + -1.6 1,490,464 + -1.4 1,490,464 + +0.4 1,490,464 + -0.2 1,490,466 + +1.4 1,490,466 + -0.2 1,490,472 - +1.4 1,490,472 - -0.6 1,490,472 - -1.6 1,490,472 - -1.4 1,490,472 - -1.6 1,490,472 - +0.2 1,490,472 - +0.4 1,490,472 - -0.9 1,490,472 - +0.8 1,490,472 - +1.4 1,490,472 - -1.4 1,490,472 - +1.2 1,490,472 - +0.2 1,490,472 - -0.4 1,490,472 - -1.7 1,490,472 - -0.6 1,490,472 - +0.4 1,490,472 - -0.4 1,490,472 - +0.8 1,490,472 - -0.4 1,490,472 - +0.4 1,490,472 - -1.3 1,490,472 - -0.9 1,490,472 - +0.8 1,490,472 - -0.6 1,490,472 - +1.4 1,490,472 - -0.7 1,490,472 - -0.6 1,490,472 - +3.0 1,490,472 - +0.4 1,490,472 - -1.3 1,490,472 - +1.1 1,490,472 - +1.4 1,490,472 - -0.2 1,490,472 - -1.4 1,490,472 - -0.4 1,490,472 - -1.5 1,490,472 - -0.6 1,490,472 - -0.4 1,490,472 - +0.4 1,490,472 - -0.9 1,490,472 - -1.4 1,490,472 - -1.4 1,490,472 - -1.2 1,490,472 - +1.4 1,490,472 - +1.8 1,490,472 - -1.7 1,490,472 - +1.4 1,490,472 - -0.9 1,490,472 - +0.4 1,490,472 - -0.6 1,490,472 - -0.6 1,490,472 - -1.6 1,490,472 - -0.2 1,490,472 - -0.2 1,490,472 - -0.3 1,490,472 - -0.6 1,490,472 - -0.9 1,490,472 - +1.4 1,490,472 - -1.4 1,490,472 - -2.0 1,490,472 - -2.2 1,490,472 - -0.2 1,490,472 - +2.4 1,490,472 - +0.0 1,490,472 - -0.2 1,490,472 - +2.4 1,490,472 - +0.4 1,490,472 - -0.9 1,490,472 - +1.4 1,490,474 - +0.3 1,490,526 + +1.4 1,490,526 + +0.8 1,490,540 + -0.2 1,490,542 + +0.8 1,490,542 + -2.7 1,490,548 - -2.3 1,490,550 + -0.2 1,490,550 + +0.4 1,490,550 + -0.2 1,490,550 + -0.2 1,490,550 + -0.2 1,490,550 + -2.0 1,490,550 + -0.6 1,490,550 + -0.6 1,490,550 + -1.4 1,490,550 + -0.6 1,490,550 + +1.4 1,490,550 - -0.9 1,490,555 - -1.7 1,490,558 - -1.2 1,490,558 - -1.7 1,490,558 - -1.2 1,490,558 - -2.4 1,490,558 - -0.9 1,490,558 - -0.2 1,490,558 - -0.9 1,490,558 - -0.6 1,490,558 - -0.2 1,490,592 + -1.0 1,490,608 + +1.4 1,490,613 - -1.9 1,490,615 + -0.9 1,490,615 + +2.4 1,490,623 - +0.7 1,490,623 - +0.4 1,490,623 - -1.0 1,490,623 - -0.2 1,490,628 - -1.8 1,490,629 - +0.4 1,490,629 - -1.4 1,490,643 + +2.4 1,490,643 + +0.0 1,490,643 + +1.4 1,490,643 + -2.3 1,490,643 + +0.4 1,490,643 + -0.9 1,490,643 + -0.6 1,490,643 + +1.4 1,490,649 - PGA1_c14360 0.11 -0.9 1,490,651 - PGA1_c14360 0.11 +1.1 1,490,723 + PGA1_c14360 0.21 -1.4 1,490,723 + PGA1_c14360 0.21 -0.9 1,490,730 - PGA1_c14360 0.22 -2.5 1,490,731 - PGA1_c14360 0.22 -2.3 1,490,731 - PGA1_c14360 0.22 +0.4 1,490,731 - PGA1_c14360 0.22 -0.2 1,490,731 - PGA1_c14360 0.22 +0.4 1,490,747 + PGA1_c14360 0.24 -1.9 1,490,755 - PGA1_c14360 0.25 -0.6 1,490,805 + PGA1_c14360 0.32 -1.6 1,490,818 - PGA1_c14360 0.34 -1.6 1,490,868 + PGA1_c14360 0.41 +0.8 1,490,876 - PGA1_c14360 0.42 -2.0 1,490,893 + PGA1_c14360 0.45 -0.6 1,490,913 - PGA1_c14360 0.47 -0.4 1,490,924 + PGA1_c14360 0.49 +2.4 1,490,957 - PGA1_c14360 0.53 -0.2 1,490,967 - PGA1_c14360 0.55 -0.9 1,490,977 - PGA1_c14360 0.56 -0.6 1,490,998 - PGA1_c14360 0.59 -0.9 1,490,998 - PGA1_c14360 0.59 -1.0 1,491,011 + PGA1_c14360 0.61 -0.9 1,491,071 - PGA1_c14360 0.69 -1.6 1,491,153 - PGA1_c14360 0.81 +1.4 1,491,177 - PGA1_c14360 0.84 -1.8 1,491,190 + PGA1_c14360 0.86 -2.3 1,491,284 - +0.1 1,491,285 + +0.4 1,491,293 - -0.9 1,491,294 - -1.4 1,491,400 + +1.4 1,491,421 + -0.6 1,491,422 + +3.4 1,491,429 + -0.4 1,493,869 - -0.9 1,493,897 - PGA1_c14380 0.10 +0.8 1,493,915 - PGA1_c14380 0.11 -0.6 1,493,922 + PGA1_c14380 0.11 -1.6 1,493,942 + PGA1_c14380 0.12 -0.2 1,494,043 + PGA1_c14380 0.17 +1.4 1,494,053 + PGA1_c14380 0.18 -0.6 1,494,111 + PGA1_c14380 0.20 -1.1 1,494,191 - PGA1_c14380 0.24 +0.7 1,494,275 + PGA1_c14380 0.28 +0.8 1,494,362 - PGA1_c14380 0.32 +1.4 1,494,367 - PGA1_c14380 0.33 +1.4 1,494,524 + PGA1_c14380 0.40 -1.2 1,494,548 - PGA1_c14380 0.41 +1.4
Or see this region's nucleotide sequence