Experiment: m.b. Fusidic 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_134 and HP15_135 are separated by 10 nucleotides HP15_135 and HP15_136 are separated by 75 nucleotides HP15_136 and HP15_137 are separated by 57 nucleotides HP15_137 and HP15_138 are separated by 45 nucleotides
HP15_134: HP15_134 - conserved hypothetical protein, at 140,304 to 141,128
_134
HP15_135: HP15_135 - von Willebrand factor, type A-like protein, at 141,139 to 142,911
_135
HP15_136: HP15_136 - conserved hypothetical protein, at 142,987 to 143,280
_136
HP15_137: HP15_137 - hypothetical protein, at 143,338 to 143,526
_137
HP15_138: HP15_138 - protein containing Phage P4 alpha, zinc-binding domain, at 143,572 to 144,687
_138
Position (kb)
141
142
143 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 140.189 kb on - strand at 140.203 kb on + strand at 140.211 kb on - strand at 140.217 kb on + strand at 140.236 kb on + strand at 140.244 kb on - strand at 140.273 kb on + strand at 140.345 kb on - strand at 140.416 kb on + strand, within HP15_134 at 140.664 kb on - strand, within HP15_134 at 140.666 kb on + strand, within HP15_134 at 140.734 kb on + strand, within HP15_134 at 140.734 kb on + strand, within HP15_134 at 140.749 kb on + strand, within HP15_134 at 140.757 kb on - strand, within HP15_134 at 140.849 kb on + strand, within HP15_134 at 140.900 kb on + strand, within HP15_134 at 140.900 kb on + strand, within HP15_134 at 140.900 kb on + strand, within HP15_134 at 140.900 kb on + strand, within HP15_134 at 140.905 kb on + strand, within HP15_134 at 140.908 kb on - strand, within HP15_134 at 140.908 kb on - strand, within HP15_134 at 140.908 kb on - strand, within HP15_134 at 140.937 kb on + strand, within HP15_134 at 140.955 kb on + strand, within HP15_134 at 140.955 kb on + strand, within HP15_134 at 140.955 kb on + strand, within HP15_134 at 140.963 kb on - strand, within HP15_134 at 140.963 kb on - strand, within HP15_134 at 140.963 kb on - strand, within HP15_134 at 141.002 kb on + strand, within HP15_134 at 141.081 kb on + strand at 141.137 kb on - strand at 141.237 kb on + strand at 141.275 kb on - strand at 141.318 kb on + strand, within HP15_135 at 141.359 kb on + strand, within HP15_135 at 141.390 kb on + strand, within HP15_135 at 141.414 kb on + strand, within HP15_135 at 141.414 kb on + strand, within HP15_135 at 141.506 kb on - strand, within HP15_135 at 141.536 kb on - strand, within HP15_135 at 141.554 kb on + strand, within HP15_135 at 141.602 kb on - strand, within HP15_135 at 141.748 kb on + strand, within HP15_135 at 141.749 kb on + strand, within HP15_135 at 141.756 kb on - strand, within HP15_135 at 141.757 kb on - strand, within HP15_135 at 141.793 kb on + strand, within HP15_135 at 141.798 kb on + strand, within HP15_135 at 141.819 kb on + strand, within HP15_135 at 141.979 kb on + strand, within HP15_135 at 141.979 kb on + strand, within HP15_135 at 141.987 kb on - strand, within HP15_135 at 141.987 kb on - strand, within HP15_135 at 141.987 kb on - strand, within HP15_135 at 141.987 kb on - strand, within HP15_135 at 142.055 kb on + strand, within HP15_135 at 142.055 kb on + strand, within HP15_135 at 142.065 kb on + strand, within HP15_135 at 142.083 kb on - strand, within HP15_135 at 142.089 kb on + strand, within HP15_135 at 142.136 kb on + strand, within HP15_135 at 142.136 kb on + strand, within HP15_135 at 142.180 kb on + strand, within HP15_135 at 142.276 kb on - strand, within HP15_135 at 142.336 kb on + strand, within HP15_135 at 142.398 kb on + strand, within HP15_135 at 142.542 kb on - strand, within HP15_135 at 142.633 kb on + strand, within HP15_135 at 142.638 kb on + strand, within HP15_135 at 142.658 kb on - strand, within HP15_135 at 142.687 kb on - strand, within HP15_135 at 142.806 kb on - strand at 142.845 kb on - strand at 142.847 kb on + strand at 143.020 kb on + strand, within HP15_136 at 143.032 kb on + strand, within HP15_136 at 143.032 kb on + strand, within HP15_136 at 143.212 kb on - strand, within HP15_136 at 143.227 kb on - strand, within HP15_136 at 143.251 kb on + strand at 143.295 kb on + strand at 143.302 kb on + strand at 143.303 kb on - strand at 143.310 kb on + strand at 143.310 kb on - strand at 143.327 kb on + strand at 143.330 kb on - strand at 143.336 kb on + strand at 143.439 kb on + strand, within HP15_137 at 143.520 kb on - strand at 143.562 kb on + strand at 143.564 kb on + strand at 143.569 kb on + strand at 143.577 kb on - strand at 143.593 kb on + strand at 143.593 kb on + strand at 143.601 kb on - strand at 143.601 kb on - strand at 143.658 kb on + strand at 143.677 kb on - strand at 143.688 kb on + strand, within HP15_138 at 143.688 kb on - strand, within HP15_138 at 143.710 kb on - strand, within HP15_138 at 143.747 kb on - strand, within HP15_138
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.03 mg/ml remove 140,189 - -0.1 140,203 + +0.7 140,211 - +0.3 140,217 + +0.1 140,236 + +1.9 140,244 - -1.9 140,273 + +0.7 140,345 - +0.0 140,416 + HP15_134 0.14 +0.3 140,664 - HP15_134 0.44 +0.7 140,666 + HP15_134 0.44 +0.5 140,734 + HP15_134 0.52 -0.7 140,734 + HP15_134 0.52 -1.0 140,749 + HP15_134 0.54 +0.5 140,757 - HP15_134 0.55 -0.8 140,849 + HP15_134 0.66 -0.2 140,900 + HP15_134 0.72 -0.2 140,900 + HP15_134 0.72 -1.0 140,900 + HP15_134 0.72 +2.3 140,900 + HP15_134 0.72 -0.7 140,905 + HP15_134 0.73 -0.8 140,908 - HP15_134 0.73 -0.7 140,908 - HP15_134 0.73 +1.6 140,908 - HP15_134 0.73 +0.6 140,937 + HP15_134 0.77 +0.0 140,955 + HP15_134 0.79 +0.4 140,955 + HP15_134 0.79 -0.8 140,955 + HP15_134 0.79 -1.4 140,963 - HP15_134 0.80 +0.3 140,963 - HP15_134 0.80 +0.0 140,963 - HP15_134 0.80 +0.6 141,002 + HP15_134 0.85 +0.5 141,081 + -0.2 141,137 - +0.6 141,237 + +0.7 141,275 - +0.6 141,318 + HP15_135 0.10 +0.5 141,359 + HP15_135 0.12 +0.2 141,390 + HP15_135 0.14 +0.7 141,414 + HP15_135 0.16 +0.1 141,414 + HP15_135 0.16 +0.3 141,506 - HP15_135 0.21 -0.2 141,536 - HP15_135 0.22 +0.1 141,554 + HP15_135 0.23 +0.1 141,602 - HP15_135 0.26 -1.7 141,748 + HP15_135 0.34 +0.4 141,749 + HP15_135 0.34 +0.3 141,756 - HP15_135 0.35 -0.5 141,757 - HP15_135 0.35 -1.3 141,793 + HP15_135 0.37 +0.4 141,798 + HP15_135 0.37 -0.1 141,819 + HP15_135 0.38 +0.0 141,979 + HP15_135 0.47 +0.2 141,979 + HP15_135 0.47 +0.5 141,987 - HP15_135 0.48 +0.1 141,987 - HP15_135 0.48 +0.4 141,987 - HP15_135 0.48 +0.1 141,987 - HP15_135 0.48 -0.3 142,055 + HP15_135 0.52 -0.2 142,055 + HP15_135 0.52 -0.2 142,065 + HP15_135 0.52 +0.7 142,083 - HP15_135 0.53 +1.0 142,089 + HP15_135 0.54 +0.6 142,136 + HP15_135 0.56 +0.8 142,136 + HP15_135 0.56 +0.3 142,180 + HP15_135 0.59 +0.0 142,276 - HP15_135 0.64 +0.5 142,336 + HP15_135 0.68 -0.2 142,398 + HP15_135 0.71 +0.5 142,542 - HP15_135 0.79 +0.3 142,633 + HP15_135 0.84 +3.4 142,638 + HP15_135 0.85 -0.1 142,658 - HP15_135 0.86 +0.4 142,687 - HP15_135 0.87 +0.3 142,806 - +0.5 142,845 - -0.3 142,847 + -1.7 143,020 + HP15_136 0.11 +1.4 143,032 + HP15_136 0.15 -0.4 143,032 + HP15_136 0.15 -0.5 143,212 - HP15_136 0.77 -0.3 143,227 - HP15_136 0.82 +0.3 143,251 + -1.0 143,295 + +0.7 143,302 + -0.2 143,303 - -0.1 143,310 + -3.0 143,310 - -0.6 143,327 + -0.7 143,330 - -0.2 143,336 + -0.2 143,439 + HP15_137 0.53 +0.8 143,520 - +0.8 143,562 + -0.1 143,564 + -0.7 143,569 + -0.9 143,577 - +1.2 143,593 + +0.1 143,593 + -0.7 143,601 - +0.4 143,601 - -0.2 143,658 + +0.9 143,677 - +0.5 143,688 + HP15_138 0.10 +0.5 143,688 - HP15_138 0.10 +0.6 143,710 - HP15_138 0.12 +0.3 143,747 - HP15_138 0.16 -0.5
Or see this region's nucleotide sequence