Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13500

Experiment: m.b. Spectinomycin 0.00625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c13490 and PGA1_c13500 are separated by 142 nucleotidesPGA1_c13500 and PGA1_c13510 overlap by 8 nucleotidesPGA1_c13510 and PGA1_c13520 overlap by 1 nucleotides PGA1_c13490: PGA1_c13490 - putative cytochrome P450, at 1,395,870 to 1,397,300 _c13490 PGA1_c13500: PGA1_c13500 - hypothetical protein, at 1,397,443 to 1,397,661 _c13500 PGA1_c13510: PGA1_c13510 - hypothetical protein, at 1,397,654 to 1,397,860 _c13510 PGA1_c13520: PGA1_c13520 - fumarate hydratase class II, at 1,397,860 to 1,399,254 _c13520 Position (kb) 1397 1398Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1396.537 kb on + strand, within PGA1_c13490at 1396.545 kb on - strand, within PGA1_c13490at 1396.618 kb on - strand, within PGA1_c13490at 1396.658 kb on + strand, within PGA1_c13490at 1396.658 kb on + strand, within PGA1_c13490at 1396.694 kb on + strand, within PGA1_c13490at 1396.694 kb on + strand, within PGA1_c13490at 1396.702 kb on - strand, within PGA1_c13490at 1396.702 kb on - strand, within PGA1_c13490at 1396.707 kb on - strand, within PGA1_c13490at 1396.746 kb on + strand, within PGA1_c13490at 1396.759 kb on + strand, within PGA1_c13490at 1396.764 kb on + strand, within PGA1_c13490at 1396.764 kb on + strand, within PGA1_c13490at 1396.764 kb on + strand, within PGA1_c13490at 1396.764 kb on + strand, within PGA1_c13490at 1396.764 kb on + strand, within PGA1_c13490at 1396.764 kb on + strand, within PGA1_c13490at 1396.764 kb on + strand, within PGA1_c13490at 1396.769 kb on + strand, within PGA1_c13490at 1396.769 kb on + strand, within PGA1_c13490at 1396.769 kb on + strand, within PGA1_c13490at 1396.769 kb on + strand, within PGA1_c13490at 1396.769 kb on + strand, within PGA1_c13490at 1396.772 kb on - strand, within PGA1_c13490at 1396.834 kb on - strand, within PGA1_c13490at 1396.882 kb on + strand, within PGA1_c13490at 1396.925 kb on + strand, within PGA1_c13490at 1396.983 kb on - strand, within PGA1_c13490at 1397.002 kb on - strand, within PGA1_c13490at 1397.145 kb on + strand, within PGA1_c13490at 1397.172 kb on + strandat 1397.180 kb on - strandat 1397.335 kb on + strandat 1397.401 kb on + strandat 1397.429 kb on + strandat 1397.459 kb on - strandat 1397.483 kb on - strand, within PGA1_c13500at 1397.488 kb on + strand, within PGA1_c13500at 1397.500 kb on + strand, within PGA1_c13500at 1397.508 kb on - strand, within PGA1_c13500at 1397.551 kb on + strand, within PGA1_c13500at 1397.562 kb on - strand, within PGA1_c13500at 1397.636 kb on - strand, within PGA1_c13500at 1397.715 kb on - strand, within PGA1_c13510at 1397.737 kb on - strand, within PGA1_c13510at 1397.763 kb on - strand, within PGA1_c13510

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.00625 mg/ml
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1,396,537 + PGA1_c13490 0.47 -1.7
1,396,545 - PGA1_c13490 0.47 -0.1
1,396,618 - PGA1_c13490 0.52 -1.1
1,396,658 + PGA1_c13490 0.55 -1.0
1,396,658 + PGA1_c13490 0.55 -1.7
1,396,694 + PGA1_c13490 0.58 -2.7
1,396,694 + PGA1_c13490 0.58 +0.5
1,396,702 - PGA1_c13490 0.58 +0.6
1,396,702 - PGA1_c13490 0.58 +3.5
1,396,707 - PGA1_c13490 0.58 +0.2
1,396,746 + PGA1_c13490 0.61 -1.5
1,396,759 + PGA1_c13490 0.62 -0.4
1,396,764 + PGA1_c13490 0.62 -1.1
1,396,764 + PGA1_c13490 0.62 -1.5
1,396,764 + PGA1_c13490 0.62 -2.5
1,396,764 + PGA1_c13490 0.62 -1.2
1,396,764 + PGA1_c13490 0.62 +1.0
1,396,764 + PGA1_c13490 0.62 -0.1
1,396,764 + PGA1_c13490 0.62 +0.7
1,396,769 + PGA1_c13490 0.63 +0.1
1,396,769 + PGA1_c13490 0.63 -0.7
1,396,769 + PGA1_c13490 0.63 -1.1
1,396,769 + PGA1_c13490 0.63 +0.2
1,396,769 + PGA1_c13490 0.63 -0.8
1,396,772 - PGA1_c13490 0.63 -2.1
1,396,834 - PGA1_c13490 0.67 -0.4
1,396,882 + PGA1_c13490 0.71 -0.3
1,396,925 + PGA1_c13490 0.74 -2.1
1,396,983 - PGA1_c13490 0.78 -0.7
1,397,002 - PGA1_c13490 0.79 -1.0
1,397,145 + PGA1_c13490 0.89 -1.4
1,397,172 + +0.6
1,397,180 - +1.6
1,397,335 + -0.1
1,397,401 + -1.7
1,397,429 + -1.1
1,397,459 - +0.8
1,397,483 - PGA1_c13500 0.18 +1.5
1,397,488 + PGA1_c13500 0.21 -0.8
1,397,500 + PGA1_c13500 0.26 -2.2
1,397,508 - PGA1_c13500 0.30 -0.4
1,397,551 + PGA1_c13500 0.49 -0.5
1,397,562 - PGA1_c13500 0.54 +1.2
1,397,636 - PGA1_c13500 0.88 -0.3
1,397,715 - PGA1_c13510 0.29 +1.2
1,397,737 - PGA1_c13510 0.40 -0.5
1,397,763 - PGA1_c13510 0.53 +0.6

Or see this region's nucleotide sequence