Strain Fitness in Marinobacter adhaerens HP15 around HP15_1251

Experiment: m.b. Fusidic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1249 and HP15_1250 are separated by 53 nucleotidesHP15_1250 and HP15_1251 are separated by 97 nucleotidesHP15_1251 and HP15_1252 are separated by 6 nucleotidesHP15_1252 and HP15_1253 are separated by 213 nucleotides HP15_1249: HP15_1249 - two-component system sensor protein, at 1,306,544 to 1,310,062 _1249 HP15_1250: HP15_1250 - conserved hypothetical protein, membrane, at 1,310,116 to 1,310,622 _1250 HP15_1251: HP15_1251 - large component of pyruvate transporter (actP-like) (from data), at 1,310,720 to 1,312,486 _1251 HP15_1252: HP15_1252 - small component of pyruvate transporter (TIGR03647) (from data), at 1,312,493 to 1,312,759 _1252 HP15_1253: HP15_1253 - DNA polymerase III, epsilon subunit, at 1,312,973 to 1,313,680 _1253 Position (kb) 1310 1311 1312 1313Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1310.131 kb on - strandat 1310.163 kb on + strandat 1310.163 kb on + strandat 1310.171 kb on - strand, within HP15_1250at 1310.171 kb on - strand, within HP15_1250at 1310.171 kb on - strand, within HP15_1250at 1310.171 kb on - strand, within HP15_1250at 1310.205 kb on - strand, within HP15_1250at 1310.261 kb on + strand, within HP15_1250at 1310.367 kb on - strand, within HP15_1250at 1310.368 kb on - strand, within HP15_1250at 1310.472 kb on - strand, within HP15_1250at 1310.573 kb on - strandat 1310.573 kb on - strandat 1310.601 kb on - strandat 1310.952 kb on + strand, within HP15_1251at 1310.959 kb on - strand, within HP15_1251at 1310.978 kb on + strand, within HP15_1251at 1311.087 kb on - strand, within HP15_1251at 1311.101 kb on + strand, within HP15_1251at 1311.115 kb on + strand, within HP15_1251at 1311.217 kb on + strand, within HP15_1251at 1311.936 kb on + strand, within HP15_1251at 1311.941 kb on + strand, within HP15_1251at 1311.949 kb on - strand, within HP15_1251at 1311.963 kb on - strand, within HP15_1251at 1312.019 kb on + strand, within HP15_1251at 1312.032 kb on + strand, within HP15_1251at 1312.068 kb on - strand, within HP15_1251at 1312.114 kb on - strand, within HP15_1251at 1312.383 kb on + strandat 1312.393 kb on - strandat 1312.401 kb on + strandat 1312.431 kb on + strandat 1312.581 kb on - strand, within HP15_1252at 1312.601 kb on + strand, within HP15_1252at 1312.750 kb on - strandat 1312.750 kb on - strandat 1312.917 kb on - strandat 1312.917 kb on - strandat 1312.917 kb on - strandat 1312.917 kb on - strandat 1312.998 kb on + strandat 1313.077 kb on + strand, within HP15_1253at 1313.139 kb on - strand, within HP15_1253at 1313.159 kb on + strand, within HP15_1253at 1313.167 kb on - strand, within HP15_1253at 1313.186 kb on - strand, within HP15_1253at 1313.186 kb on - strand, within HP15_1253at 1313.186 kb on - strand, within HP15_1253at 1313.441 kb on - strand, within HP15_1253

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.03 mg/ml
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1,310,131 - +0.1
1,310,163 + -0.8
1,310,163 + -3.6
1,310,171 - HP15_1250 0.11 -1.5
1,310,171 - HP15_1250 0.11 +0.5
1,310,171 - HP15_1250 0.11 -0.3
1,310,171 - HP15_1250 0.11 +0.2
1,310,205 - HP15_1250 0.18 +0.5
1,310,261 + HP15_1250 0.29 -2.1
1,310,367 - HP15_1250 0.50 +0.7
1,310,368 - HP15_1250 0.50 +0.3
1,310,472 - HP15_1250 0.70 +0.1
1,310,573 - -0.1
1,310,573 - +2.1
1,310,601 - +0.2
1,310,952 + HP15_1251 0.13 +0.4
1,310,959 - HP15_1251 0.14 +0.1
1,310,978 + HP15_1251 0.15 +0.5
1,311,087 - HP15_1251 0.21 -0.4
1,311,101 + HP15_1251 0.22 -1.4
1,311,115 + HP15_1251 0.22 +1.9
1,311,217 + HP15_1251 0.28 +0.3
1,311,936 + HP15_1251 0.69 -0.0
1,311,941 + HP15_1251 0.69 -0.1
1,311,949 - HP15_1251 0.70 +0.0
1,311,963 - HP15_1251 0.70 -1.0
1,312,019 + HP15_1251 0.74 -0.8
1,312,032 + HP15_1251 0.74 +0.3
1,312,068 - HP15_1251 0.76 -0.8
1,312,114 - HP15_1251 0.79 +2.0
1,312,383 + -0.7
1,312,393 - -0.5
1,312,401 + +0.4
1,312,431 + +0.2
1,312,581 - HP15_1252 0.33 +0.4
1,312,601 + HP15_1252 0.40 +2.4
1,312,750 - +0.0
1,312,750 - -0.5
1,312,917 - -0.6
1,312,917 - -0.2
1,312,917 - -0.6
1,312,917 - -0.4
1,312,998 + -0.4
1,313,077 + HP15_1253 0.15 -0.4
1,313,139 - HP15_1253 0.23 +0.1
1,313,159 + HP15_1253 0.26 +0.5
1,313,167 - HP15_1253 0.27 +1.8
1,313,186 - HP15_1253 0.30 +0.2
1,313,186 - HP15_1253 0.30 -0.2
1,313,186 - HP15_1253 0.30 -0.0
1,313,441 - HP15_1253 0.66 +1.3

Or see this region's nucleotide sequence