Experiment: m.b. Fusidic 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1100 and HP15_1101 are separated by 539 nucleotides HP15_1101 and HP15_1102 are separated by 41 nucleotides HP15_1102 and HP15_1103 are separated by 844 nucleotides
HP15_1100: HP15_1100 - ABC-transporter substrate-binding protein, at 1,126,329 to 1,127,231
_1100
HP15_1101: HP15_1101 - transposase IS3/IS911, at 1,127,771 to 1,128,055
_1101
HP15_1102: HP15_1102 - integrase catalytic region, at 1,128,097 to 1,128,906
_1102
HP15_1103: HP15_1103 - protein containing Helix-turn-helix, AraC domain, at 1,129,751 to 1,130,716
_1103
Position (kb)
1128
1129 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1127.185 kb on + strand at 1127.254 kb on + strand at 1127.260 kb on + strand at 1127.268 kb on - strand at 1127.268 kb on - strand at 1127.268 kb on - strand at 1127.288 kb on + strand at 1127.340 kb on - strand at 1127.360 kb on + strand at 1127.585 kb on - strand at 1127.603 kb on + strand at 1127.603 kb on + strand at 1127.611 kb on - strand at 1127.672 kb on + strand at 1127.680 kb on - strand at 1127.712 kb on + strand at 1127.720 kb on - strand at 1127.720 kb on - strand at 1127.735 kb on + strand at 1127.735 kb on + strand at 1127.735 kb on + strand at 1127.735 kb on + strand at 1127.743 kb on - strand at 1127.768 kb on + strand at 1127.768 kb on + strand at 1127.790 kb on - strand at 1127.822 kb on + strand, within HP15_1101 at 1127.830 kb on - strand, within HP15_1101 at 1127.833 kb on + strand, within HP15_1101 at 1127.841 kb on - strand, within HP15_1101 at 1127.841 kb on - strand, within HP15_1101 at 1127.841 kb on - strand, within HP15_1101 at 1127.952 kb on - strand, within HP15_1101 at 1127.992 kb on + strand, within HP15_1101 at 1127.994 kb on + strand, within HP15_1101 at 1128.024 kb on - strand, within HP15_1101 at 1128.034 kb on - strand at 1128.122 kb on - strand at 1128.134 kb on + strand at 1128.139 kb on + strand at 1128.219 kb on + strand, within HP15_1102 at 1128.224 kb on + strand, within HP15_1102 at 1128.224 kb on + strand, within HP15_1102 at 1128.253 kb on + strand, within HP15_1102 at 1128.253 kb on + strand, within HP15_1102 at 1128.349 kb on - strand, within HP15_1102 at 1128.386 kb on + strand, within HP15_1102 at 1128.427 kb on + strand, within HP15_1102 at 1128.430 kb on - strand, within HP15_1102 at 1128.432 kb on + strand, within HP15_1102 at 1128.432 kb on + strand, within HP15_1102 at 1128.464 kb on - strand, within HP15_1102 at 1128.466 kb on + strand, within HP15_1102 at 1128.474 kb on - strand, within HP15_1102 at 1128.488 kb on - strand, within HP15_1102 at 1128.488 kb on - strand, within HP15_1102 at 1128.490 kb on - strand, within HP15_1102 at 1128.525 kb on - strand, within HP15_1102 at 1128.544 kb on - strand, within HP15_1102 at 1128.581 kb on - strand, within HP15_1102 at 1128.587 kb on + strand, within HP15_1102 at 1128.680 kb on + strand, within HP15_1102 at 1128.798 kb on + strand, within HP15_1102 at 1128.806 kb on - strand, within HP15_1102 at 1128.806 kb on - strand, within HP15_1102 at 1128.875 kb on + strand at 1128.875 kb on + strand at 1128.875 kb on + strand at 1128.883 kb on - strand at 1128.883 kb on - strand at 1128.883 kb on - strand at 1128.945 kb on - strand at 1129.029 kb on + strand at 1129.064 kb on - strand at 1129.069 kb on - strand at 1129.216 kb on + strand at 1129.244 kb on + strand at 1129.267 kb on + strand at 1129.275 kb on - strand at 1129.275 kb on - strand at 1129.340 kb on - strand at 1129.389 kb on - strand at 1129.391 kb on + strand at 1129.480 kb on + strand at 1129.490 kb on + strand at 1129.493 kb on + strand at 1129.498 kb on + strand at 1129.498 kb on + strand at 1129.500 kb on + strand at 1129.500 kb on + strand at 1129.534 kb on + strand at 1129.534 kb on + strand at 1129.534 kb on + strand at 1129.542 kb on - strand at 1129.542 kb on - strand at 1129.542 kb on - strand at 1129.601 kb on + strand at 1129.601 kb on + strand at 1129.601 kb on + strand at 1129.854 kb on - strand, within HP15_1103 at 1129.864 kb on + strand, within HP15_1103 at 1129.864 kb on + strand, within HP15_1103
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.03 mg/ml remove 1,127,185 + +2.3 1,127,254 + -1.1 1,127,260 + -1.3 1,127,268 - -0.8 1,127,268 - -0.8 1,127,268 - -1.3 1,127,288 + -0.3 1,127,340 - -0.4 1,127,360 + -0.3 1,127,585 - +0.7 1,127,603 + +0.1 1,127,603 + -0.3 1,127,611 - +0.2 1,127,672 + -0.1 1,127,680 - +0.0 1,127,712 + +0.1 1,127,720 - -0.9 1,127,720 - +0.1 1,127,735 + -0.5 1,127,735 + +2.1 1,127,735 + -0.6 1,127,735 + -0.2 1,127,743 - +0.2 1,127,768 + -1.3 1,127,768 + -0.8 1,127,790 - -0.8 1,127,822 + HP15_1101 0.18 +0.1 1,127,830 - HP15_1101 0.21 +2.3 1,127,833 + HP15_1101 0.22 -0.6 1,127,841 - HP15_1101 0.25 -0.0 1,127,841 - HP15_1101 0.25 -0.3 1,127,841 - HP15_1101 0.25 -2.4 1,127,952 - HP15_1101 0.64 -0.2 1,127,992 + HP15_1101 0.78 -0.2 1,127,994 + HP15_1101 0.78 +0.3 1,128,024 - HP15_1101 0.89 +1.2 1,128,034 - +0.1 1,128,122 - -0.1 1,128,134 + +1.3 1,128,139 + -0.3 1,128,219 + HP15_1102 0.15 -0.3 1,128,224 + HP15_1102 0.16 +1.7 1,128,224 + HP15_1102 0.16 -0.9 1,128,253 + HP15_1102 0.19 -0.1 1,128,253 + HP15_1102 0.19 +0.2 1,128,349 - HP15_1102 0.31 -1.2 1,128,386 + HP15_1102 0.36 +0.1 1,128,427 + HP15_1102 0.41 -0.5 1,128,430 - HP15_1102 0.41 -0.1 1,128,432 + HP15_1102 0.41 -1.0 1,128,432 + HP15_1102 0.41 -0.1 1,128,464 - HP15_1102 0.45 -0.2 1,128,466 + HP15_1102 0.46 -0.5 1,128,474 - HP15_1102 0.47 +0.7 1,128,488 - HP15_1102 0.48 -0.7 1,128,488 - HP15_1102 0.48 +0.7 1,128,490 - HP15_1102 0.49 +0.7 1,128,525 - HP15_1102 0.53 -0.2 1,128,544 - HP15_1102 0.55 +0.0 1,128,581 - HP15_1102 0.60 +0.7 1,128,587 + HP15_1102 0.60 -0.6 1,128,680 + HP15_1102 0.72 -0.1 1,128,798 + HP15_1102 0.87 +0.1 1,128,806 - HP15_1102 0.88 -0.6 1,128,806 - HP15_1102 0.88 -0.1 1,128,875 + +1.1 1,128,875 + +0.9 1,128,875 + -0.8 1,128,883 - -0.0 1,128,883 - -0.3 1,128,883 - -0.1 1,128,945 - -0.5 1,129,029 + -0.8 1,129,064 - -0.1 1,129,069 - -1.4 1,129,216 + -0.5 1,129,244 + -0.1 1,129,267 + -0.3 1,129,275 - -0.8 1,129,275 - +0.4 1,129,340 - +1.0 1,129,389 - -0.2 1,129,391 + -0.6 1,129,480 + -0.7 1,129,490 + -0.9 1,129,493 + +0.2 1,129,498 + +0.1 1,129,498 + -0.2 1,129,500 + -0.8 1,129,500 + +0.1 1,129,534 + +0.2 1,129,534 + -0.0 1,129,534 + -1.1 1,129,542 - +0.1 1,129,542 - -0.6 1,129,542 - -0.3 1,129,601 + +0.4 1,129,601 + -0.1 1,129,601 + -0.8 1,129,854 - HP15_1103 0.11 -0.4 1,129,864 + HP15_1103 0.12 -0.9 1,129,864 + HP15_1103 0.12 +0.6
Or see this region's nucleotide sequence