Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2825 and Dsui_2826 are separated by 33 nucleotides Dsui_2826 and Dsui_2827 are separated by 204 nucleotides Dsui_2827 and Dsui_2828 are separated by 59 nucleotides
Dsui_2825: Dsui_2825 - hypothetical protein, at 3,001,095 to 3,004,202
_2825
Dsui_2826: Dsui_2826 - hypothetical protein, at 3,004,236 to 3,004,346
_2826
Dsui_2827: Dsui_2827 - hypothetical protein, at 3,004,551 to 3,005,000
_2827
Dsui_2828: Dsui_2828 - hypothetical protein, at 3,005,060 to 3,006,079
_2828
Position (kb)
3004
3005 Strain fitness (log2 ratio)
-2
-1
0
1 at 3003.261 kb on + strand, within Dsui_2825 at 3003.309 kb on - strand, within Dsui_2825 at 3003.335 kb on + strand, within Dsui_2825 at 3003.372 kb on + strand, within Dsui_2825 at 3003.399 kb on - strand, within Dsui_2825 at 3003.491 kb on + strand, within Dsui_2825 at 3003.529 kb on + strand, within Dsui_2825 at 3003.532 kb on - strand, within Dsui_2825 at 3003.575 kb on + strand, within Dsui_2825 at 3003.580 kb on + strand, within Dsui_2825 at 3003.580 kb on + strand, within Dsui_2825 at 3003.580 kb on + strand, within Dsui_2825 at 3003.580 kb on + strand, within Dsui_2825 at 3003.588 kb on - strand, within Dsui_2825 at 3003.636 kb on - strand at 3003.647 kb on - strand at 3003.773 kb on - strand, within Dsui_2825 at 3003.782 kb on - strand, within Dsui_2825 at 3003.802 kb on - strand, within Dsui_2825 at 3003.860 kb on + strand, within Dsui_2825 at 3003.868 kb on - strand, within Dsui_2825 at 3003.976 kb on - strand at 3004.021 kb on - strand at 3004.037 kb on + strand at 3004.040 kb on - strand at 3004.052 kb on + strand at 3004.102 kb on - strand at 3004.131 kb on + strand at 3004.200 kb on - strand at 3004.284 kb on - strand, within Dsui_2826 at 3004.346 kb on + strand at 3004.354 kb on - strand at 3004.427 kb on + strand at 3004.427 kb on + strand at 3004.435 kb on - strand at 3004.504 kb on - strand at 3004.577 kb on - strand at 3004.591 kb on + strand at 3004.610 kb on + strand, within Dsui_2827 at 3004.645 kb on + strand, within Dsui_2827 at 3004.645 kb on + strand, within Dsui_2827 at 3004.669 kb on - strand, within Dsui_2827 at 3004.693 kb on + strand, within Dsui_2827 at 3004.721 kb on - strand, within Dsui_2827 at 3004.740 kb on - strand, within Dsui_2827 at 3004.897 kb on + strand, within Dsui_2827 at 3004.903 kb on + strand, within Dsui_2827 at 3004.905 kb on + strand, within Dsui_2827 at 3004.915 kb on - strand, within Dsui_2827 at 3004.971 kb on + strand at 3005.051 kb on + strand at 3005.111 kb on + strand at 3005.129 kb on - strand at 3005.196 kb on - strand, within Dsui_2828 at 3005.248 kb on - strand, within Dsui_2828 at 3005.280 kb on + strand, within Dsui_2828 at 3005.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 3,003,261 + Dsui_2825 0.70 -0.5 3,003,309 - Dsui_2825 0.71 +0.1 3,003,335 + Dsui_2825 0.72 +0.2 3,003,372 + Dsui_2825 0.73 -0.2 3,003,399 - Dsui_2825 0.74 +1.6 3,003,491 + Dsui_2825 0.77 +0.1 3,003,529 + Dsui_2825 0.78 +0.1 3,003,532 - Dsui_2825 0.78 +1.0 3,003,575 + Dsui_2825 0.80 -0.4 3,003,580 + Dsui_2825 0.80 -0.1 3,003,580 + Dsui_2825 0.80 +0.2 3,003,580 + Dsui_2825 0.80 -0.6 3,003,580 + Dsui_2825 0.80 -0.5 3,003,588 - Dsui_2825 0.80 -0.2 3,003,636 - +1.0 3,003,647 - +0.5 3,003,773 - Dsui_2825 0.86 +0.6 3,003,782 - Dsui_2825 0.86 -0.3 3,003,802 - Dsui_2825 0.87 -0.2 3,003,860 + Dsui_2825 0.89 -0.5 3,003,868 - Dsui_2825 0.89 -0.2 3,003,976 - +0.7 3,004,021 - -1.0 3,004,037 + -1.5 3,004,040 - -1.1 3,004,052 + -0.8 3,004,102 - -0.0 3,004,131 + -1.1 3,004,200 - -1.1 3,004,284 - Dsui_2826 0.43 -2.3 3,004,346 + -0.4 3,004,354 - -0.3 3,004,427 + +1.1 3,004,427 + -0.6 3,004,435 - -0.2 3,004,504 - -0.2 3,004,577 - -0.2 3,004,591 + -0.1 3,004,610 + Dsui_2827 0.13 -0.6 3,004,645 + Dsui_2827 0.21 -0.5 3,004,645 + Dsui_2827 0.21 -0.7 3,004,669 - Dsui_2827 0.26 +0.8 3,004,693 + Dsui_2827 0.32 -0.3 3,004,721 - Dsui_2827 0.38 -0.5 3,004,740 - Dsui_2827 0.42 -0.2 3,004,897 + Dsui_2827 0.77 -1.2 3,004,903 + Dsui_2827 0.78 -0.7 3,004,905 + Dsui_2827 0.79 -1.0 3,004,915 - Dsui_2827 0.81 +0.0 3,004,971 + -1.4 3,005,051 + -0.8 3,005,111 + -0.3 3,005,129 - -0.8 3,005,196 - Dsui_2828 0.13 +0.1 3,005,248 - Dsui_2828 0.18 +1.0 3,005,280 + Dsui_2828 0.22 -0.6 3,005,297 + +0.5
Or see this region's nucleotide sequence