Strain Fitness in Dechlorosoma suillum PS around Dsui_2731

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2729 and Dsui_2730 are separated by 68 nucleotidesDsui_2730 and Dsui_2731 are separated by 11 nucleotidesDsui_2731 and Dsui_2732 are separated by 79 nucleotides Dsui_2729: Dsui_2729 - Zn-dependent protease, at 2,884,931 to 2,885,584 _2729 Dsui_2730: Dsui_2730 - Sua5/YciO/YrdC/YwlC family protein, at 2,885,653 to 2,886,276 _2730 Dsui_2731: Dsui_2731 - putative metal-dependent phosphoesterase, PHP family, at 2,886,288 to 2,887,127 _2731 Dsui_2732: Dsui_2732 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,887,207 to 2,888,073 _2732 Position (kb) 2886 2887 2888Strain fitness (log2 ratio) -2 -1 0 1 2at 2885.565 kb on + strandat 2885.636 kb on - strandat 2885.641 kb on - strandat 2885.768 kb on + strandat 2885.776 kb on - strand, within Dsui_2730at 2885.799 kb on - strand, within Dsui_2730at 2885.799 kb on - strand, within Dsui_2730at 2885.800 kb on + strandat 2886.034 kb on - strand, within Dsui_2730at 2886.053 kb on + strandat 2886.063 kb on + strandat 2886.073 kb on + strand, within Dsui_2730at 2886.226 kb on - strandat 2886.226 kb on - strandat 2886.266 kb on + strandat 2886.319 kb on - strandat 2886.319 kb on - strandat 2886.339 kb on - strandat 2886.352 kb on + strandat 2886.362 kb on + strandat 2886.365 kb on - strandat 2886.365 kb on - strandat 2886.453 kb on - strand, within Dsui_2731at 2886.485 kb on - strand, within Dsui_2731at 2886.498 kb on - strand, within Dsui_2731at 2886.513 kb on + strand, within Dsui_2731at 2886.608 kb on - strand, within Dsui_2731at 2886.610 kb on + strand, within Dsui_2731at 2886.618 kb on - strand, within Dsui_2731at 2886.628 kb on - strand, within Dsui_2731at 2886.642 kb on - strand, within Dsui_2731at 2886.676 kb on + strand, within Dsui_2731at 2886.789 kb on - strand, within Dsui_2731at 2886.945 kb on - strand, within Dsui_2731at 2886.945 kb on - strand, within Dsui_2731at 2886.945 kb on - strand, within Dsui_2731at 2886.948 kb on + strand, within Dsui_2731at 2887.019 kb on - strand, within Dsui_2731at 2887.131 kb on - strandat 2887.149 kb on + strandat 2887.149 kb on + strandat 2887.501 kb on - strand, within Dsui_2732at 2887.516 kb on - strand, within Dsui_2732at 2887.555 kb on - strand, within Dsui_2732at 2887.572 kb on - strandat 2887.614 kb on - strand, within Dsui_2732at 2887.677 kb on - strand, within Dsui_2732at 2887.706 kb on - strand, within Dsui_2732at 2887.926 kb on - strand, within Dsui_2732at 2888.030 kb on - strandat 2888.101 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,885,565 + -0.1
2,885,636 - -0.8
2,885,641 - -1.1
2,885,768 + +1.9
2,885,776 - Dsui_2730 0.20 +0.2
2,885,799 - Dsui_2730 0.23 -1.5
2,885,799 - Dsui_2730 0.23 -0.0
2,885,800 + +0.6
2,886,034 - Dsui_2730 0.61 +1.3
2,886,053 + +0.3
2,886,063 + +0.1
2,886,073 + Dsui_2730 0.67 +0.1
2,886,226 - +0.5
2,886,226 - +0.0
2,886,266 + -0.1
2,886,319 - +0.1
2,886,319 - -0.0
2,886,339 - -0.6
2,886,352 + +0.1
2,886,362 + +1.9
2,886,365 - +0.7
2,886,365 - +0.3
2,886,453 - Dsui_2731 0.20 +0.3
2,886,485 - Dsui_2731 0.23 +0.2
2,886,498 - Dsui_2731 0.25 +0.6
2,886,513 + Dsui_2731 0.27 -0.9
2,886,608 - Dsui_2731 0.38 +0.6
2,886,610 + Dsui_2731 0.38 -2.0
2,886,618 - Dsui_2731 0.39 -0.5
2,886,628 - Dsui_2731 0.40 -1.2
2,886,642 - Dsui_2731 0.42 -0.2
2,886,676 + Dsui_2731 0.46 +1.6
2,886,789 - Dsui_2731 0.60 +0.3
2,886,945 - Dsui_2731 0.78 +0.3
2,886,945 - Dsui_2731 0.78 +0.3
2,886,945 - Dsui_2731 0.78 +0.5
2,886,948 + Dsui_2731 0.79 +1.7
2,887,019 - Dsui_2731 0.87 -0.2
2,887,131 - -0.6
2,887,149 + +0.0
2,887,149 + +0.1
2,887,501 - Dsui_2732 0.34 +0.3
2,887,516 - Dsui_2732 0.36 +0.6
2,887,555 - Dsui_2732 0.40 -1.2
2,887,572 - +0.9
2,887,614 - Dsui_2732 0.47 -1.1
2,887,677 - Dsui_2732 0.54 +1.9
2,887,706 - Dsui_2732 0.58 +0.2
2,887,926 - Dsui_2732 0.83 -2.4
2,888,030 - -1.3
2,888,101 + +1.7

Or see this region's nucleotide sequence