Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2729 and Dsui_2730 are separated by 68 nucleotides Dsui_2730 and Dsui_2731 are separated by 11 nucleotides Dsui_2731 and Dsui_2732 are separated by 79 nucleotides
Dsui_2729: Dsui_2729 - Zn-dependent protease, at 2,884,931 to 2,885,584
_2729
Dsui_2730: Dsui_2730 - Sua5/YciO/YrdC/YwlC family protein, at 2,885,653 to 2,886,276
_2730
Dsui_2731: Dsui_2731 - putative metal-dependent phosphoesterase, PHP family, at 2,886,288 to 2,887,127
_2731
Dsui_2732: Dsui_2732 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,887,207 to 2,888,073
_2732
Position (kb)
2886
2887
2888 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2885.565 kb on + strand at 2885.636 kb on - strand at 2885.641 kb on - strand at 2885.768 kb on + strand at 2885.776 kb on - strand, within Dsui_2730 at 2885.799 kb on - strand, within Dsui_2730 at 2885.799 kb on - strand, within Dsui_2730 at 2885.800 kb on + strand at 2886.034 kb on - strand, within Dsui_2730 at 2886.053 kb on + strand at 2886.063 kb on + strand at 2886.073 kb on + strand, within Dsui_2730 at 2886.226 kb on - strand at 2886.226 kb on - strand at 2886.266 kb on + strand at 2886.319 kb on - strand at 2886.319 kb on - strand at 2886.339 kb on - strand at 2886.352 kb on + strand at 2886.362 kb on + strand at 2886.365 kb on - strand at 2886.365 kb on - strand at 2886.453 kb on - strand, within Dsui_2731 at 2886.485 kb on - strand, within Dsui_2731 at 2886.498 kb on - strand, within Dsui_2731 at 2886.513 kb on + strand, within Dsui_2731 at 2886.608 kb on - strand, within Dsui_2731 at 2886.610 kb on + strand, within Dsui_2731 at 2886.618 kb on - strand, within Dsui_2731 at 2886.628 kb on - strand, within Dsui_2731 at 2886.642 kb on - strand, within Dsui_2731 at 2886.676 kb on + strand, within Dsui_2731 at 2886.789 kb on - strand, within Dsui_2731 at 2886.945 kb on - strand, within Dsui_2731 at 2886.945 kb on - strand, within Dsui_2731 at 2886.945 kb on - strand, within Dsui_2731 at 2886.948 kb on + strand, within Dsui_2731 at 2887.019 kb on - strand, within Dsui_2731 at 2887.131 kb on - strand at 2887.149 kb on + strand at 2887.149 kb on + strand at 2887.501 kb on - strand, within Dsui_2732 at 2887.516 kb on - strand, within Dsui_2732 at 2887.555 kb on - strand, within Dsui_2732 at 2887.572 kb on - strand at 2887.614 kb on - strand, within Dsui_2732 at 2887.677 kb on - strand, within Dsui_2732 at 2887.706 kb on - strand, within Dsui_2732 at 2887.926 kb on - strand, within Dsui_2732 at 2888.030 kb on - strand at 2888.101 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 2,885,565 + -0.1 2,885,636 - -0.8 2,885,641 - -1.1 2,885,768 + +1.9 2,885,776 - Dsui_2730 0.20 +0.2 2,885,799 - Dsui_2730 0.23 -1.5 2,885,799 - Dsui_2730 0.23 -0.0 2,885,800 + +0.6 2,886,034 - Dsui_2730 0.61 +1.3 2,886,053 + +0.3 2,886,063 + +0.1 2,886,073 + Dsui_2730 0.67 +0.1 2,886,226 - +0.5 2,886,226 - +0.0 2,886,266 + -0.1 2,886,319 - +0.1 2,886,319 - -0.0 2,886,339 - -0.6 2,886,352 + +0.1 2,886,362 + +1.9 2,886,365 - +0.7 2,886,365 - +0.3 2,886,453 - Dsui_2731 0.20 +0.3 2,886,485 - Dsui_2731 0.23 +0.2 2,886,498 - Dsui_2731 0.25 +0.6 2,886,513 + Dsui_2731 0.27 -0.9 2,886,608 - Dsui_2731 0.38 +0.6 2,886,610 + Dsui_2731 0.38 -2.0 2,886,618 - Dsui_2731 0.39 -0.5 2,886,628 - Dsui_2731 0.40 -1.2 2,886,642 - Dsui_2731 0.42 -0.2 2,886,676 + Dsui_2731 0.46 +1.6 2,886,789 - Dsui_2731 0.60 +0.3 2,886,945 - Dsui_2731 0.78 +0.3 2,886,945 - Dsui_2731 0.78 +0.3 2,886,945 - Dsui_2731 0.78 +0.5 2,886,948 + Dsui_2731 0.79 +1.7 2,887,019 - Dsui_2731 0.87 -0.2 2,887,131 - -0.6 2,887,149 + +0.0 2,887,149 + +0.1 2,887,501 - Dsui_2732 0.34 +0.3 2,887,516 - Dsui_2732 0.36 +0.6 2,887,555 - Dsui_2732 0.40 -1.2 2,887,572 - +0.9 2,887,614 - Dsui_2732 0.47 -1.1 2,887,677 - Dsui_2732 0.54 +1.9 2,887,706 - Dsui_2732 0.58 +0.2 2,887,926 - Dsui_2732 0.83 -2.4 2,888,030 - -1.3 2,888,101 + +1.7
Or see this region's nucleotide sequence