Strain Fitness in Dechlorosoma suillum PS around Dsui_2115

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2113 and Dsui_2114 are separated by 2 nucleotidesDsui_2114 and Dsui_2115 are separated by 280 nucleotidesDsui_2115 and Dsui_2116 are separated by 139 nucleotides Dsui_2113: Dsui_2113 - serine acetyltransferase, at 2,238,693 to 2,239,691 _2113 Dsui_2114: Dsui_2114 - Rhodanese-related sulfurtransferase, at 2,239,694 to 2,240,236 _2114 Dsui_2115: Dsui_2115 - transcriptional regulator, at 2,240,517 to 2,241,470 _2115 Dsui_2116: Dsui_2116 - Fe-dependent oxidoreductase, alcohol dehydrogenase, at 2,241,610 to 2,242,758 _2116 Position (kb) 2240 2241 2242Strain fitness (log2 ratio) -1 0 1 2 3at 2239.692 kb on + strandat 2240.165 kb on + strand, within Dsui_2114at 2240.173 kb on - strandat 2240.309 kb on - strandat 2240.491 kb on - strandat 2240.770 kb on + strand, within Dsui_2115at 2240.817 kb on - strand, within Dsui_2115at 2240.829 kb on - strand, within Dsui_2115at 2240.963 kb on - strand, within Dsui_2115at 2240.963 kb on - strand, within Dsui_2115at 2241.200 kb on - strand, within Dsui_2115at 2241.248 kb on + strand, within Dsui_2115at 2241.404 kb on + strandat 2241.582 kb on + strandat 2241.592 kb on + strandat 2241.627 kb on + strandat 2241.635 kb on - strandat 2241.635 kb on - strandat 2241.761 kb on - strandat 2241.763 kb on + strand, within Dsui_2116at 2241.794 kb on - strandat 2241.884 kb on - strand, within Dsui_2116at 2241.884 kb on - strand, within Dsui_2116at 2241.905 kb on + strandat 2242.053 kb on + strandat 2242.133 kb on - strand, within Dsui_2116at 2242.330 kb on + strand, within Dsui_2116at 2242.377 kb on + strand, within Dsui_2116at 2242.406 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,239,692 + +1.3
2,240,165 + Dsui_2114 0.87 -0.1
2,240,173 - +0.3
2,240,309 - +1.9
2,240,491 - -0.0
2,240,770 + Dsui_2115 0.27 -0.8
2,240,817 - Dsui_2115 0.31 +1.3
2,240,829 - Dsui_2115 0.33 -1.5
2,240,963 - Dsui_2115 0.47 +0.4
2,240,963 - Dsui_2115 0.47 -0.2
2,241,200 - Dsui_2115 0.72 -0.8
2,241,248 + Dsui_2115 0.77 -1.4
2,241,404 + -0.3
2,241,582 + +1.3
2,241,592 + -0.1
2,241,627 + +0.9
2,241,635 - +1.9
2,241,635 - +0.9
2,241,761 - +0.9
2,241,763 + Dsui_2116 0.13 -0.7
2,241,794 - +1.3
2,241,884 - Dsui_2116 0.24 -0.0
2,241,884 - Dsui_2116 0.24 -0.7
2,241,905 + +2.9
2,242,053 + +1.6
2,242,133 - Dsui_2116 0.46 +0.4
2,242,330 + Dsui_2116 0.63 -1.2
2,242,377 + Dsui_2116 0.67 -0.1
2,242,406 + +1.9

Or see this region's nucleotide sequence