Strain Fitness in Dechlorosoma suillum PS around Dsui_1707

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1706 and Dsui_1707 are separated by 15 nucleotidesDsui_1707 and Dsui_1708 are separated by 49 nucleotides Dsui_1706: Dsui_1706 - methyl-accepting chemotaxis protein, at 1,792,764 to 1,793,987 _1706 Dsui_1707: Dsui_1707 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,794,003 to 1,794,368 _1707 Dsui_1708: Dsui_1708 - chemotaxis protein histidine kinase-like protein, at 1,794,418 to 1,796,877 _1708 Position (kb) 1794 1795Strain fitness (log2 ratio) -2 -1 0 1 2at 1793.065 kb on - strand, within Dsui_1706at 1793.157 kb on - strand, within Dsui_1706at 1793.241 kb on - strand, within Dsui_1706at 1793.280 kb on - strand, within Dsui_1706at 1793.373 kb on - strand, within Dsui_1706at 1793.619 kb on + strand, within Dsui_1706at 1793.775 kb on - strand, within Dsui_1706at 1793.799 kb on - strandat 1793.829 kb on + strand, within Dsui_1706at 1793.854 kb on + strand, within Dsui_1706at 1793.895 kb on + strandat 1793.914 kb on + strandat 1793.922 kb on - strandat 1793.955 kb on - strandat 1793.963 kb on - strandat 1793.981 kb on + strandat 1793.994 kb on + strandat 1794.006 kb on - strandat 1794.063 kb on + strand, within Dsui_1707at 1794.066 kb on - strand, within Dsui_1707at 1794.071 kb on - strand, within Dsui_1707at 1794.087 kb on - strand, within Dsui_1707at 1794.125 kb on + strand, within Dsui_1707at 1794.147 kb on - strand, within Dsui_1707at 1794.153 kb on - strand, within Dsui_1707at 1794.153 kb on - strand, within Dsui_1707at 1794.184 kb on + strand, within Dsui_1707at 1794.192 kb on - strand, within Dsui_1707at 1794.202 kb on - strand, within Dsui_1707at 1794.221 kb on + strand, within Dsui_1707at 1794.221 kb on + strand, within Dsui_1707at 1794.221 kb on + strand, within Dsui_1707at 1794.221 kb on + strand, within Dsui_1707at 1794.226 kb on + strand, within Dsui_1707at 1794.229 kb on - strand, within Dsui_1707at 1794.229 kb on - strand, within Dsui_1707at 1794.229 kb on - strand, within Dsui_1707at 1794.234 kb on - strand, within Dsui_1707at 1794.412 kb on + strandat 1794.438 kb on + strandat 1794.601 kb on - strandat 1794.652 kb on + strandat 1794.664 kb on - strand, within Dsui_1708at 1794.686 kb on - strand, within Dsui_1708at 1794.968 kb on + strand, within Dsui_1708at 1794.973 kb on + strand, within Dsui_1708at 1795.119 kb on - strand, within Dsui_1708at 1795.333 kb on - strand, within Dsui_1708

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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1,793,065 - Dsui_1706 0.25 +0.8
1,793,157 - Dsui_1706 0.32 -1.1
1,793,241 - Dsui_1706 0.39 -0.6
1,793,280 - Dsui_1706 0.42 -1.4
1,793,373 - Dsui_1706 0.50 -0.6
1,793,619 + Dsui_1706 0.70 +0.2
1,793,775 - Dsui_1706 0.83 -0.3
1,793,799 - +0.2
1,793,829 + Dsui_1706 0.87 +0.4
1,793,854 + Dsui_1706 0.89 +1.1
1,793,895 + +0.2
1,793,914 + +0.3
1,793,922 - +0.0
1,793,955 - +0.2
1,793,963 - +1.0
1,793,981 + -0.6
1,793,994 + -0.3
1,794,006 - +0.0
1,794,063 + Dsui_1707 0.16 +0.3
1,794,066 - Dsui_1707 0.17 +0.6
1,794,071 - Dsui_1707 0.19 +1.1
1,794,087 - Dsui_1707 0.23 -0.8
1,794,125 + Dsui_1707 0.33 +0.2
1,794,147 - Dsui_1707 0.39 -1.8
1,794,153 - Dsui_1707 0.41 +1.8
1,794,153 - Dsui_1707 0.41 -0.3
1,794,184 + Dsui_1707 0.49 -0.1
1,794,192 - Dsui_1707 0.52 +1.2
1,794,202 - Dsui_1707 0.54 +0.5
1,794,221 + Dsui_1707 0.60 +0.0
1,794,221 + Dsui_1707 0.60 -0.6
1,794,221 + Dsui_1707 0.60 +0.0
1,794,221 + Dsui_1707 0.60 +0.8
1,794,226 + Dsui_1707 0.61 -0.1
1,794,229 - Dsui_1707 0.62 -0.9
1,794,229 - Dsui_1707 0.62 +0.5
1,794,229 - Dsui_1707 0.62 +0.2
1,794,234 - Dsui_1707 0.63 +0.2
1,794,412 + -0.1
1,794,438 + -1.5
1,794,601 - -0.6
1,794,652 + -0.1
1,794,664 - Dsui_1708 0.10 +0.6
1,794,686 - Dsui_1708 0.11 -0.3
1,794,968 + Dsui_1708 0.22 +1.2
1,794,973 + Dsui_1708 0.23 +1.2
1,795,119 - Dsui_1708 0.28 +0.6
1,795,333 - Dsui_1708 0.37 +0.5

Or see this region's nucleotide sequence