Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1589 and Dsui_1590 are separated by 13 nucleotides Dsui_1590 and Dsui_1591 are separated by 111 nucleotides Dsui_1591 and Dsui_1592 overlap by 4 nucleotides
Dsui_1589: Dsui_1589 - Nucleoside-diphosphate-sugar pyrophosphorylase family protein, at 1,669,899 to 1,670,582
_1589
Dsui_1590: Dsui_1590 - hypothetical protein, at 1,670,596 to 1,670,868
_1590
Dsui_1591: Dsui_1591 - Xaa-Pro aminopeptidase, at 1,670,980 to 1,672,281
_1591
Dsui_1592: Dsui_1592 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 1,672,278 to 1,673,432
_1592
Position (kb)
1670
1671
1672
1673 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1670.068 kb on - strand, within Dsui_1589 at 1670.075 kb on + strand, within Dsui_1589 at 1670.110 kb on - strand at 1670.186 kb on + strand, within Dsui_1589 at 1670.238 kb on + strand, within Dsui_1589 at 1670.479 kb on + strand, within Dsui_1589 at 1670.483 kb on + strand, within Dsui_1589 at 1670.500 kb on + strand, within Dsui_1589 at 1670.576 kb on + strand at 1670.807 kb on - strand at 1670.814 kb on + strand, within Dsui_1590 at 1670.819 kb on + strand, within Dsui_1590 at 1670.819 kb on + strand, within Dsui_1590 at 1670.850 kb on + strand at 1670.850 kb on + strand at 1670.850 kb on + strand at 1670.858 kb on - strand at 1670.858 kb on - strand at 1670.914 kb on - strand at 1671.246 kb on + strand, within Dsui_1591 at 1671.555 kb on + strand, within Dsui_1591 at 1671.555 kb on + strand, within Dsui_1591 at 1671.673 kb on + strand, within Dsui_1591 at 1671.685 kb on + strand, within Dsui_1591 at 1671.855 kb on + strand, within Dsui_1591 at 1671.944 kb on + strand, within Dsui_1591 at 1671.991 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 1,670,068 - Dsui_1589 0.25 -0.7 1,670,075 + Dsui_1589 0.26 +0.4 1,670,110 - +0.5 1,670,186 + Dsui_1589 0.42 +1.3 1,670,238 + Dsui_1589 0.50 +0.8 1,670,479 + Dsui_1589 0.85 +1.6 1,670,483 + Dsui_1589 0.85 +0.3 1,670,500 + Dsui_1589 0.88 -0.5 1,670,576 + +0.3 1,670,807 - +1.3 1,670,814 + Dsui_1590 0.80 -0.4 1,670,819 + Dsui_1590 0.82 +0.2 1,670,819 + Dsui_1590 0.82 -0.7 1,670,850 + +0.6 1,670,850 + -0.7 1,670,850 + +0.4 1,670,858 - -0.4 1,670,858 - +2.8 1,670,914 - -0.2 1,671,246 + Dsui_1591 0.20 +0.5 1,671,555 + Dsui_1591 0.44 +1.3 1,671,555 + Dsui_1591 0.44 +0.3 1,671,673 + Dsui_1591 0.53 +0.0 1,671,685 + Dsui_1591 0.54 +0.3 1,671,855 + Dsui_1591 0.67 -1.1 1,671,944 + Dsui_1591 0.74 +2.8 1,671,991 + +1.8
Or see this region's nucleotide sequence