Strain Fitness in Dechlorosoma suillum PS around Dsui_1446

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1445 and Dsui_1446 are separated by 11 nucleotidesDsui_1446 and Dsui_1447 are separated by 212 nucleotidesDsui_1447 and Dsui_1448 are separated by 2 nucleotides Dsui_1445: Dsui_1445 - succinyl-CoA synthetase, beta subunit, at 1,500,292 to 1,501,452 _1445 Dsui_1446: Dsui_1446 - succinyl-CoA synthetase, alpha subunit, at 1,501,464 to 1,502,360 _1446 Dsui_1447: Dsui_1447 - integral membrane protein, YjbE family, at 1,502,573 to 1,503,274 _1447 Dsui_1448: Dsui_1448 - putative ornithine cyclodeaminase, mu-crystallin, at 1,503,277 to 1,504,248 _1448 Position (kb) 1501 1502 1503Strain fitness (log2 ratio) -3 -2 -1 0 1at 1500.643 kb on + strand, within Dsui_1445at 1500.643 kb on + strand, within Dsui_1445at 1500.643 kb on + strand, within Dsui_1445at 1500.651 kb on - strand, within Dsui_1445at 1500.770 kb on + strand, within Dsui_1445at 1500.923 kb on - strand, within Dsui_1445at 1501.115 kb on + strand, within Dsui_1445at 1501.123 kb on - strand, within Dsui_1445at 1501.229 kb on - strand, within Dsui_1445at 1501.412 kb on + strandat 1501.448 kb on + strandat 1501.448 kb on + strandat 1501.456 kb on - strandat 1501.493 kb on + strandat 1501.493 kb on + strandat 1501.628 kb on + strand, within Dsui_1446at 1501.861 kb on + strand, within Dsui_1446at 1501.869 kb on - strand, within Dsui_1446at 1502.006 kb on + strand, within Dsui_1446at 1502.052 kb on - strand, within Dsui_1446at 1502.261 kb on - strand, within Dsui_1446at 1502.502 kb on - strandat 1502.523 kb on - strandat 1502.540 kb on + strandat 1502.628 kb on - strandat 1502.686 kb on + strand, within Dsui_1447at 1502.744 kb on - strand, within Dsui_1447at 1502.761 kb on - strand, within Dsui_1447at 1502.793 kb on + strand, within Dsui_1447at 1502.898 kb on - strand, within Dsui_1447at 1502.898 kb on - strand, within Dsui_1447

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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1,500,643 + Dsui_1445 0.30 -1.1
1,500,643 + Dsui_1445 0.30 -0.3
1,500,643 + Dsui_1445 0.30 -0.7
1,500,651 - Dsui_1445 0.31 +0.6
1,500,770 + Dsui_1445 0.41 -0.4
1,500,923 - Dsui_1445 0.54 -1.1
1,501,115 + Dsui_1445 0.71 -2.5
1,501,123 - Dsui_1445 0.72 -1.3
1,501,229 - Dsui_1445 0.81 -1.1
1,501,412 + -0.6
1,501,448 + -1.2
1,501,448 + -2.2
1,501,456 - -0.6
1,501,493 + -0.4
1,501,493 + -2.5
1,501,628 + Dsui_1446 0.18 -3.0
1,501,861 + Dsui_1446 0.44 -0.6
1,501,869 - Dsui_1446 0.45 -0.6
1,502,006 + Dsui_1446 0.60 -2.5
1,502,052 - Dsui_1446 0.66 -0.1
1,502,261 - Dsui_1446 0.89 -1.4
1,502,502 - -0.1
1,502,523 - -0.3
1,502,540 + -1.3
1,502,628 - -0.4
1,502,686 + Dsui_1447 0.16 +0.3
1,502,744 - Dsui_1447 0.24 -0.2
1,502,761 - Dsui_1447 0.27 -1.0
1,502,793 + Dsui_1447 0.31 -0.6
1,502,898 - Dsui_1447 0.46 -1.7
1,502,898 - Dsui_1447 0.46 -1.2

Or see this region's nucleotide sequence