Strain Fitness in Dechlorosoma suillum PS around Dsui_1442

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1441 and Dsui_1442 are separated by 154 nucleotidesDsui_1442 and Dsui_1443 are separated by 96 nucleotides Dsui_1441: Dsui_1441 - phenylacetate-CoA ligase, at 1,495,219 to 1,496,523 _1441 Dsui_1442: Dsui_1442 - putative efflux protein, MATE family, at 1,496,678 to 1,498,042 _1442 Dsui_1443: Dsui_1443 - phenylacetate-CoA ligase, at 1,498,139 to 1,499,455 _1443 Position (kb) 1496 1497 1498 1499Strain fitness (log2 ratio) -1 0 1 2 3at 1495.816 kb on - strand, within Dsui_1441at 1495.868 kb on + strandat 1495.912 kb on - strand, within Dsui_1441at 1495.956 kb on + strandat 1495.957 kb on - strand, within Dsui_1441at 1495.960 kb on + strandat 1496.051 kb on + strandat 1496.056 kb on + strand, within Dsui_1441at 1496.077 kb on - strand, within Dsui_1441at 1496.168 kb on + strandat 1496.331 kb on - strand, within Dsui_1441at 1496.346 kb on + strand, within Dsui_1441at 1496.435 kb on + strandat 1496.572 kb on + strandat 1496.667 kb on - strandat 1496.799 kb on + strandat 1497.000 kb on - strand, within Dsui_1442at 1497.035 kb on - strand, within Dsui_1442at 1497.113 kb on - strandat 1497.130 kb on + strand, within Dsui_1442at 1497.135 kb on - strandat 1497.159 kb on - strandat 1497.430 kb on + strand, within Dsui_1442at 1497.465 kb on + strandat 1497.528 kb on - strandat 1497.558 kb on - strandat 1497.729 kb on - strand, within Dsui_1442at 1498.022 kb on - strandat 1498.104 kb on - strandat 1498.240 kb on - strandat 1498.274 kb on - strand, within Dsui_1443at 1498.578 kb on + strand, within Dsui_1443at 1498.607 kb on + strand, within Dsui_1443at 1498.649 kb on + strand, within Dsui_1443at 1498.791 kb on + strand, within Dsui_1443at 1498.825 kb on + strand, within Dsui_1443at 1498.833 kb on - strand, within Dsui_1443at 1499.021 kb on + strand, within Dsui_1443

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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1,495,816 - Dsui_1441 0.46 -0.1
1,495,868 + +2.9
1,495,912 - Dsui_1441 0.53 -0.4
1,495,956 + +2.9
1,495,957 - Dsui_1441 0.57 -0.3
1,495,960 + +2.9
1,496,051 + +0.1
1,496,056 + Dsui_1441 0.64 +0.7
1,496,077 - Dsui_1441 0.66 -0.5
1,496,168 + +2.6
1,496,331 - Dsui_1441 0.85 -0.0
1,496,346 + Dsui_1441 0.86 -0.1
1,496,435 + +0.6
1,496,572 + -0.1
1,496,667 - -0.1
1,496,799 + +1.1
1,497,000 - Dsui_1442 0.24 +0.8
1,497,035 - Dsui_1442 0.26 +0.9
1,497,113 - +2.9
1,497,130 + Dsui_1442 0.33 -0.3
1,497,135 - +2.9
1,497,159 - +0.9
1,497,430 + Dsui_1442 0.55 +0.7
1,497,465 + +1.9
1,497,528 - +1.9
1,497,558 - +1.3
1,497,729 - Dsui_1442 0.77 -0.4
1,498,022 - +0.3
1,498,104 - +1.6
1,498,240 - -0.6
1,498,274 - Dsui_1443 0.10 +0.3
1,498,578 + Dsui_1443 0.33 +0.1
1,498,607 + Dsui_1443 0.36 +0.1
1,498,649 + Dsui_1443 0.39 +0.4
1,498,791 + Dsui_1443 0.50 -1.1
1,498,825 + Dsui_1443 0.52 +0.1
1,498,833 - Dsui_1443 0.53 +0.1
1,499,021 + Dsui_1443 0.67 +0.1

Or see this region's nucleotide sequence